Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_K12-2
(252 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P77779|YBFO_ECOLI Hypothetical protein ybfO 30 2.2
sp|Q8RGP6|TYSY_FUSNN Thymidylate synthase (TS) (TSase) 28 5.0
sp|Q10415|PMIP_SCHPO Probable mitochondrial intermediate pe... 28 6.5
>sp|P77779|YBFO_ECOLI Hypothetical protein ybfO
Length = 477
Score = 29.6 bits (65), Expect = 2.2
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 69 SHYPMQFMPPPLYEIGSIWIPKLNHIDVYNSSGVDYLSRWLAKMEQRRSLG 221
+++P +PP P +N D ++G+D L LAKM+QR S G
Sbjct: 424 TNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRG 474
>sp|Q8RGP6|TYSY_FUSNN Thymidylate synthase (TS) (TSase)
Length = 275
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 99 PLYEIGSIWIPKLNHIDVYNSSGVDYLSRW 188
P+ E+ IWI + N++DV N G + W
Sbjct: 69 PIRELYWIWILQSNNVDVLNELGCKFWDEW 98
>sp|Q10415|PMIP_SCHPO Probable mitochondrial intermediate peptidase, mitochondrial
precursor (MIP)
Length = 762
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 57 RGYVSHYPMQFMPPPLYEIGSIWIPKLNHIDVYNSS 164
R + S Y ++F+P + G +W P +N ++VYN +
Sbjct: 419 RLFSSLYGLRFVPADISP-GEVWHPDVNKVNVYNEN 453
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,512,607
Number of Sequences: 369166
Number of extensions: 580271
Number of successful extensions: 1306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)