Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_K12-1
(497 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 236 2e-62
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 235 5e-62
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 234 6e-62
sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha) 233 2e-61
sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha) 233 2e-61
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 232 3e-61
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 231 5e-61
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 230 2e-60
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 229 4e-60
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 229 4e-60
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 236 bits (602), Expect = 2e-62
Identities = 110/138 (79%), Positives = 124/138 (89%)
Frame = +2
Query: 2 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 181
EALPGDNVGFN+KNVSVK+IRRGNVC DSKSDP ++A F +QVII+NHPG+I AGYSPV
Sbjct: 301 EALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPV 360
Query: 182 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 361
+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPP
Sbjct: 361 IDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPP 420
Query: 362 LGRFAVRDMKQTVAVGVI 415
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 235 bits (599), Expect = 5e-62
Identities = 109/138 (78%), Positives = 124/138 (89%)
Frame = +2
Query: 2 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 181
EALPGDNVGFN+KNVSVK+IRRGNVC DSK+DP ++A F +QVII+NHPG+I AGYSPV
Sbjct: 301 EALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPV 360
Query: 182 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 361
+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPP
Sbjct: 361 IDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPP 420
Query: 362 LGRFAVRDMKQTVAVGVI 415
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 234 bits (598), Expect = 6e-62
Identities = 107/138 (77%), Positives = 127/138 (92%)
Frame = +2
Query: 2 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 181
E LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA++A F AQVI++NHPG+I AGY+PV
Sbjct: 299 EGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPV 358
Query: 182 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 361
LDCHTAHIACKFAEL++KIDRRSGK LED PK KSGD+ +V+++PSKPMCVE +++YPP
Sbjct: 359 LDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPP 418
Query: 362 LGRFAVRDMKQTVAVGVI 415
LGRFAVRDM+QTVAVGVI
Sbjct: 419 LGRFAVRDMRQTVAVGVI 436
>sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 233 bits (594), Expect = 2e-61
Identities = 106/138 (76%), Positives = 127/138 (92%)
Frame = +2
Query: 2 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 181
E LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA+++ F AQVII+NHPG+I AGY+PV
Sbjct: 299 EGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPV 358
Query: 182 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 361
LDCHTAHIACKF+EL++KIDRRSGK +ED PK KSGD+ +V++VPSKPMCVE +++YPP
Sbjct: 359 LDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPP 418
Query: 362 LGRFAVRDMKQTVAVGVI 415
LGRFAVRDM+QTVAVGVI
Sbjct: 419 LGRFAVRDMRQTVAVGVI 436
>sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 233 bits (594), Expect = 2e-61
Identities = 106/138 (76%), Positives = 127/138 (92%)
Frame = +2
Query: 2 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 181
E LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA+++ F AQVII+NHPG+I AGY+PV
Sbjct: 299 EGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPV 358
Query: 182 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 361
LDCHTAHIACKF+EL++KIDRRSGK +ED PK KSGD+ +V++VPSKPMCVE +++YPP
Sbjct: 359 LDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPP 418
Query: 362 LGRFAVRDMKQTVAVGVI 415
LGRFAVRDM+QTVAVGVI
Sbjct: 419 LGRFAVRDMRQTVAVGVI 436
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 232 bits (592), Expect = 3e-61
Identities = 106/138 (76%), Positives = 126/138 (91%)
Frame = +2
Query: 2 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 181
EALPGDNVGFN+KN+S+K+IRRG+V SDSK+DPA++ F AQVIIMNHPG+I AGY+PV
Sbjct: 301 EALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPV 360
Query: 182 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 361
LDCHTAHIACKFAEL +K+DRRSGK +ED PK KSGDAG++ L+P+KP+CVETF+EYPP
Sbjct: 361 LDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPP 420
Query: 362 LGRFAVRDMKQTVAVGVI 415
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 231 bits (590), Expect = 5e-61
Identities = 109/138 (78%), Positives = 122/138 (88%)
Frame = +2
Query: 2 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 181
EALPGDNVGFN+KN+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PV
Sbjct: 301 EALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPV 360
Query: 182 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 361
LDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVETFS+YPP
Sbjct: 361 LDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPP 420
Query: 362 LGRFAVRDMKQTVAVGVI 415
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 230 bits (586), Expect = 2e-60
Identities = 108/138 (78%), Positives = 122/138 (88%)
Frame = +2
Query: 2 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 181
EALPGDNVGFN+KN+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PV
Sbjct: 301 EALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPV 360
Query: 182 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 361
LDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPP
Sbjct: 361 LDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPP 420
Query: 362 LGRFAVRDMKQTVAVGVI 415
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 229 bits (583), Expect = 4e-60
Identities = 108/138 (78%), Positives = 122/138 (88%)
Frame = +2
Query: 2 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 181
EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PV
Sbjct: 301 EALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPV 360
Query: 182 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 361
LDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPP
Sbjct: 361 LDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPP 420
Query: 362 LGRFAVRDMKQTVAVGVI 415
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 229 bits (583), Expect = 4e-60
Identities = 108/138 (78%), Positives = 122/138 (88%)
Frame = +2
Query: 2 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 181
EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PV
Sbjct: 301 EALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPV 360
Query: 182 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 361
LDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPP
Sbjct: 361 LDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPP 420
Query: 362 LGRFAVRDMKQTVAVGVI 415
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,178,876
Number of Sequences: 369166
Number of extensions: 1077598
Number of successful extensions: 3080
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3029
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3119256630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)