Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_J24
(576 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96T49|PP16B_HUMAN Protein phosphatase 1 regulatory inhi... 54 2e-07
sp|Q8VHQ3|PP16B_MOUSE Protein phosphatase 1 regulatory inhi... 54 2e-07
sp|Q95N27|PP16B_BOVIN Protein phosphatase 1 regulatory inhi... 54 2e-07
sp|Q9BXW6|OSR1_HUMAN Oxysterol binding protein-related prot... 49 1e-05
sp|O15084|ANR28_HUMAN Ankyrin repeat domain protein 28 47 3e-05
sp|Q9ULJ7|YB23_HUMAN Hypothetical protein KIAA1223 46 6e-05
sp|Q923M0|PP16A_MOUSE Protein phosphatase 1 regulatory subu... 45 1e-04
sp|O95271|TNKS1_HUMAN Tankyrase 1 (TANK1) (Tankyrase I) (TN... 45 2e-04
sp|Q6W2J9|BCOR_HUMAN BCoR protein (BCL-6 corepressor) 44 2e-04
sp|O55222|ILK_MOUSE Integrin-linked protein kinase 44 2e-04
>sp|Q96T49|PP16B_HUMAN Protein phosphatase 1 regulatory inhibitor subunit 16B
(TGF-beta-inhibited membrane-associated protein)
(hTIMAP) (CAAX box protein TIMAP) (Ankyrin repeat domain
protein 4)
Length = 567
Score = 54.3 bits (129), Expect = 2e-07
Identities = 35/95 (36%), Positives = 52/95 (54%)
Frame = +3
Query: 3 SELVETFLTEKISFNKLNEEEKINCQLYMACFWGDKEVVKSLILKHANVNHANPVTLWTP 182
+E V FL K+S + NE+ L+ C +E+VK L+ ANVN A LWTP
Sbjct: 81 AEEVRYFLKNKVSPDLCNEDGLT--ALHQCCIDNFEEIVKLLLSHGANVN-AKDNELWTP 137
Query: 183 LHAAVFNEHGLIVTVLLEFKADPMSLDYKGRTPID 287
LHAA H +V +L+++ AD ++++ G P D
Sbjct: 138 LHAAATCGHINLVKILVQYGADLLAVNSDGNMPYD 172
>sp|Q8VHQ3|PP16B_MOUSE Protein phosphatase 1 regulatory inhibitor subunit 16B
(TGF-beta-inhibited membrane-associated protein) (CAAX
box protein TIMAP)
Length = 568
Score = 54.3 bits (129), Expect = 2e-07
Identities = 35/95 (36%), Positives = 52/95 (54%)
Frame = +3
Query: 3 SELVETFLTEKISFNKLNEEEKINCQLYMACFWGDKEVVKSLILKHANVNHANPVTLWTP 182
+E V FL K+S + NE+ L+ C +E+VK L+ ANVN A LWTP
Sbjct: 81 AEEVRYFLKNKVSPDLCNEDGLT--ALHQCCIDNFEEIVKLLLSHGANVN-AKDNELWTP 137
Query: 183 LHAAVFNEHGLIVTVLLEFKADPMSLDYKGRTPID 287
LHAA H +V +L+++ AD ++++ G P D
Sbjct: 138 LHAAATCGHINLVKILVQYGADLLAVNSDGNMPYD 172
>sp|Q95N27|PP16B_BOVIN Protein phosphatase 1 regulatory inhibitor subunit 16B
(TGF-beta-inhibited membrane-associated protein)
(bTIMAP) (CAAX box protein TIMAP)
Length = 568
Score = 54.3 bits (129), Expect = 2e-07
Identities = 35/95 (36%), Positives = 52/95 (54%)
Frame = +3
Query: 3 SELVETFLTEKISFNKLNEEEKINCQLYMACFWGDKEVVKSLILKHANVNHANPVTLWTP 182
+E V FL K+S + NE+ L+ C +E+VK L+ ANVN A LWTP
Sbjct: 81 AEEVRYFLKNKVSPDLCNEDGLT--ALHQCCIDNFEEIVKLLLSHGANVN-AKDNELWTP 137
Query: 183 LHAAVFNEHGLIVTVLLEFKADPMSLDYKGRTPID 287
LHAA H +V +L+++ AD ++++ G P D
Sbjct: 138 LHAAATCGHINLVKILVQYGADLLAVNSDGNMPYD 172
>sp|Q9BXW6|OSR1_HUMAN Oxysterol binding protein-related protein 1 (OSBP-related protein
1) (ORP-1)
Length = 950
Score = 48.5 bits (114), Expect = 1e-05
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +3
Query: 81 LYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPMSL 260
L++AC++G ++VV+ L+ A VN N + TPLH A F +V +LLE+ AD +
Sbjct: 52 LHLACYFGHRQVVQDLLKAGAEVNVLNDMGD-TPLHRAAFTGRKELVMLLLEYNADTTIV 110
Query: 261 DYKGRTPIDFASASEL 308
+ G+T + A E+
Sbjct: 111 NGSGQTAKEVTHAEEI 126
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 174 WTPLHAAVFNEHGLIVTVLLEFKADPMSLDYKGRTPID---FASASELIWPFFALLGLSA 344
WTPLH A + H +V LL+ A+ L+ G TP+ F EL+ +L L
Sbjct: 49 WTPLHLACYFGHRQVVQDLLKAGAEVNVLNDMGDTPLHRAAFTGRKELV-----MLLLEY 103
Query: 345 HTETIII 365
+ +T I+
Sbjct: 104 NADTTIV 110
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 177 TPLHAAVFNEHGLIVTVLLEFKADPMSLDYKGRTPIDFASASEL 308
TPLH A + H LL ADP + + P+D A +E+
Sbjct: 178 TPLHCAAYRAHKQCALKLLRSGADPNLKNKNDQKPLDLAQGAEM 221
>sp|O15084|ANR28_HUMAN Ankyrin repeat domain protein 28
Length = 1086
Score = 47.0 bits (110), Expect = 3e-05
Identities = 32/97 (32%), Positives = 52/97 (53%)
Frame = +3
Query: 21 FLTEKISFNKLNEEEKINCQLYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVF 200
F E ++F ++ + L+ A + GD E+++ LIL A VN + L TPLH AV
Sbjct: 62 FKKEDVNF----QDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDSKWL-TPLHRAVA 116
Query: 201 NEHGLIVTVLLEFKADPMSLDYKGRTPIDFASASELI 311
+ V VLL+ AD + D +TP+ A+A++ +
Sbjct: 117 SCSEEAVQVLLKHSADVNARDKNWQTPLHIAAANKAV 153
Score = 38.1 bits (87), Expect = 0.016
Identities = 27/82 (32%), Positives = 42/82 (51%)
Frame = +3
Query: 57 EEEKINCQLYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLE 236
+++K L+ A G VVK L+ ++N N TPLH A +N ++V L++
Sbjct: 235 KDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGN-TPLHVACYNGQDVVVNELID 293
Query: 237 FKADPMSLDYKGRTPIDFASAS 302
A + KG TP+ FA+AS
Sbjct: 294 CGAIVNQKNEKGFTPLHFAAAS 315
Score = 37.7 bits (86), Expect = 0.021
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +3
Query: 72 NCQLYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADP 251
N L++AC+ G VV LI A VN N +TPLH A + HG + LL
Sbjct: 273 NTPLHVACYNGQDVVVNELIDCGAIVNQKNEKG-FTPLHFAAASTHGALCLELLVGNGAD 331
Query: 252 MSLDYK-GRTPIDFASASELIWPFFALLGLSAHTETII 362
+++ K G+TP+ AL G + ++TII
Sbjct: 332 VNMKSKDGKTPLHMT----------ALHGRFSRSQTII 359
Score = 36.6 bits (83), Expect = 0.046
Identities = 27/96 (28%), Positives = 48/96 (50%)
Frame = +3
Query: 6 ELVETFLTEKISFNKLNEEEKINCQLYMACFWGDKEVVKSLILKHANVNHANPVTLWTPL 185
E+V+ L+ + N +++++ ++ A + G EVVK L+ A V + + +TPL
Sbjct: 187 EMVKLLLSRGANINAFDKKDRR--AIHWAAYMGHIEVVKLLVSHGAEVTCKDKKS-YTPL 243
Query: 186 HAAVFNEHGLIVTVLLEFKADPMSLDYKGRTPIDFA 293
HAA + +V LL+ D + G TP+ A
Sbjct: 244 HAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVA 279
Score = 35.8 bits (81), Expect = 0.079
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 177 TPLHAAVFNEHGLIVTVLLEFKADPMSLDYKGRTPIDFAS 296
TPLHAA F +H + +LL A S+D G+TP+ A+
Sbjct: 858 TPLHAAAFTDHVECLQLLLSHNAQVNSVDSTGKTPLMMAA 897
Score = 34.7 bits (78), Expect = 0.18
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 81 LYMACFWGDKEVVKSLILKHANVNHANPVTLW--TPLHAAVFNEHGLIVTVLLEFKADPM 254
L ++ G + V SL+ K ANV+ + W T LH H V LL+ A +
Sbjct: 690 LMLSVLNGHTDCVYSLLNKGANVDAKDK---WGRTALHRGAVTGHEECVDALLQHGAKCL 746
Query: 255 SLDYKGRTPIDFASASELIWPFFALLGLSA 344
D +GRTPI ++A I ALL +A
Sbjct: 747 LRDSRGRTPIHLSAACGHIGVLGALLQSAA 776
Score = 34.3 bits (77), Expect = 0.23
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 57 EEEKINCQLYMACFWGDKEVVKSLILK--HANVNHANPVTLWTPLHAAVFNEHGLIVTVL 230
++ N L++AC G + ++ K N+ +A L TPLH A N ++V L
Sbjct: 919 QDNSKNTALHLACSKGHETSALLILEKITDRNLINATNAALQTPLHVAARNGLTMVVQEL 978
Query: 231 LEFKADPMSLDYKGRTP 281
L A +++D G TP
Sbjct: 979 LGKGASVLAVDENGYTP 995
Score = 32.3 bits (72), Expect = 0.87
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +3
Query: 81 LYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPM-- 254
L+ AC+ G + V+ L+ V ++PLH AV N++ +L++ +
Sbjct: 793 LHWACYNGHETCVELLL--EQEVFQKTEGNAFSPLHCAVINDNEGAAEMLIDTLGASIVN 850
Query: 255 SLDYKGRTPIDFASASELIWPFFALLGLSAHTETI 359
+ D KGRTP+ A+ ++ + LL +A ++
Sbjct: 851 ATDSKGRTPLHAAAFTDHVECLQLLLSHNAQVNSV 885
Score = 31.2 bits (69), Expect = 1.9
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +3
Query: 81 LYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPMSL 260
L +A F G E V LI + A++ + + TP+HAA N H + +L+ A+P +
Sbjct: 620 LDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHAAATNGHSECLRLLIG-NAEPQNA 678
Query: 261 ----DYKGRTPI 284
D G+TP+
Sbjct: 679 VDIQDGNGQTPL 690
Score = 29.6 bits (65), Expect = 5.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 177 TPLHAAVFNEHGLIVTVLLEFKADPMSLDYKGRTPIDFAS 296
+PLH A ++ H + VL++ D + GRTP+D A+
Sbjct: 585 SPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAA 624
Score = 28.9 bits (63), Expect = 9.6
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 177 TPLHAAVFNEHGLIVTVLLEFKADPMSLDYKGRTPIDFASASELIWPFFALLGLSA 344
T LHAA + + +LL AD D GR+P+ +A+A+ FAL+G A
Sbjct: 440 TCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQCLFALVGSGA 495
>sp|Q9ULJ7|YB23_HUMAN Hypothetical protein KIAA1223
Length = 768
Score = 46.2 bits (108), Expect = 6e-05
Identities = 28/72 (38%), Positives = 38/72 (52%)
Frame = +3
Query: 81 LYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPMSL 260
L +A G+ EVV++L+ + + NH + WTPLH A F H LI L+E A +
Sbjct: 157 LSIASAQGNVEVVRTLLDRGLDENHRDDAG-WTPLHMAAFEGHRLICEALIEQGARTNEI 215
Query: 261 DYKGRTPIDFAS 296
D GR P AS
Sbjct: 216 DNDGRIPFILAS 227
Score = 36.6 bits (83), Expect = 0.046
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +3
Query: 102 GDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPMSLDYKGRTP 281
G VV LI + A V+H + + TPL A + H +V +LLE AD D GRTP
Sbjct: 65 GHASVVSLLIDRGAEVDHCDKDGM-TPLLVAAYEGHVDVVDLLLEGGADVDHTDNNGRTP 123
Query: 282 IDFASAS 302
+ A+AS
Sbjct: 124 L-LAAAS 129
Score = 36.6 bits (83), Expect = 0.046
Identities = 27/73 (36%), Positives = 39/73 (53%)
Frame = +3
Query: 81 LYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPMSL 260
L +A + G +VV L+ A+V+H + TPL AA H +V LL + A S+
Sbjct: 91 LLVAAYEGHVDVVDLLLEGGADVDHTDNNGR-TPLLAAASMGHASVVNTLLFWGAAVDSI 149
Query: 261 DYKGRTPIDFASA 299
D +GRT + ASA
Sbjct: 150 DSEGRTVLSIASA 162
Score = 33.1 bits (74), Expect = 0.51
Identities = 31/97 (31%), Positives = 44/97 (45%)
Frame = +3
Query: 6 ELVETFLTEKISFNKLNEEEKINCQLYMACFWGDKEVVKSLILKHANVNHANPVTLWTPL 185
E+V+ + N + E++ L A + G +VV+ LI A V+H T L
Sbjct: 332 EMVQVLIAYHADVNAADNEKR--SALQSAAWQGHVKVVQLLIEHGAVVDHTCNQGA-TAL 388
Query: 186 HAAVFNEHGLIVTVLLEFKADPMSLDYKGRTPIDFAS 296
A H +V VLLE ADP D GRT + A+
Sbjct: 389 CIAAQEGHIDVVQVLLEHGADPNHADQFGRTAMRVAA 425
>sp|Q923M0|PP16A_MOUSE Protein phosphatase 1 regulatory subunit 16A (Myosin phosphatase
targeting subunit 3)
Length = 524
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/102 (31%), Positives = 50/102 (49%)
Frame = +3
Query: 6 ELVETFLTEKISFNKLNEEEKINCQLYMACFWGDKEVVKSLILKHANVNHANPVTLWTPL 185
E V FLT +S N NE+ L+ C +E+ + L+ A+VN A WTPL
Sbjct: 85 EEVRQFLTSGVSPNLANEDGLT--ALHQCCIDDFQEMAQQLLDAGADVN-ARDSECWTPL 141
Query: 186 HAAVFNEHGLIVTVLLEFKADPMSLDYKGRTPIDFASASELI 311
HAA H +V +L+ AD ++++ G P D ++ +
Sbjct: 142 HAAATCGHLHLVELLISRGADLLAVNSDGNMPYDLCEDAQTL 183
Score = 28.9 bits (63), Expect = 9.6
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +3
Query: 81 LYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPMSL 260
L++A G EV L+ + A+++ A W PLHAA + +V +L+ AD
Sbjct: 236 LHIAAANGFSEVATLLLEQGASLS-AKDHDGWEPLHAAAYWGQVHLVELLVAHGADLNGK 294
Query: 261 DYKGRTPIDFASASEL 308
TP+D E+
Sbjct: 295 SLVDETPLDVCGDEEV 310
>sp|O95271|TNKS1_HUMAN Tankyrase 1 (TANK1) (Tankyrase I) (TNKS-1) (TRF1-interacting
ankyrin-related ADP-ribose polymerase)
Length = 1327
Score = 44.7 bits (104), Expect = 2e-04
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +3
Query: 81 LYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPMSL 260
L+ AC +G EV + L+LKH +A + +TPLH A + ++LL ADP +
Sbjct: 406 LHNACSYGHYEVTE-LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 464
Query: 261 DYKGRTPIDFASASEL 308
+ G++ +D A EL
Sbjct: 465 NCHGKSAVDMAPTPEL 480
Score = 42.7 bits (99), Expect = 6e-04
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 81 LYMACFWGDKEVVKSLILKHANVNHANPVTLW--TPLHAAVFNEHGLIVTVLLEFKADPM 254
L+ AC +G EV + L+ A+VN A+ LW TPLH A I +LL+ ADP
Sbjct: 721 LHNACSYGHYEVAELLVRHGASVNVAD---LWKFTPLHEAAAKGKYEICKLLLKHGADPT 777
Query: 255 SLDYKGRTPIDFASASE 305
+ G TP+D +
Sbjct: 778 KKNRDGNTPLDLVKEGD 794
Score = 40.0 bits (92), Expect = 0.004
Identities = 22/76 (28%), Positives = 41/76 (53%)
Frame = +3
Query: 81 LYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPMSL 260
L+ A +G ++ +L++K+ +A +TPLH A + +LL ADP
Sbjct: 874 LHNAASYGHVDIA-ALLIKYNTCVNATDKWAFTPLHEAAQKGRTQLCALLLAHGADPTMK 932
Query: 261 DYKGRTPIDFASASEL 308
+ +G+TP+D A+A ++
Sbjct: 933 NQEGQTPLDLATADDI 948
Score = 38.9 bits (89), Expect = 0.009
Identities = 26/74 (35%), Positives = 38/74 (51%)
Frame = +3
Query: 81 LYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPMSL 260
L+ AC +G EVV L+ + A+ N A +TPLH A + VLL+ ADP
Sbjct: 253 LHNACSFGHAEVVSLLLCQGADPN-ARDNWNYTPLHEAAIKGKIDVCIVLLQHGADPNIR 311
Query: 261 DYKGRTPIDFASAS 302
+ G++ +D A S
Sbjct: 312 NTDGKSALDLADPS 325
Score = 37.0 bits (84), Expect = 0.035
Identities = 29/91 (31%), Positives = 45/91 (49%)
Frame = +3
Query: 24 LTEKISFNKLNEEEKINCQLYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFN 203
L + + N + + + L+ A +G K+VV+ L+ ANV HA PLH A
Sbjct: 201 LVDAANVNAKDMAGRKSSPLHFAAGFGRKDVVEHLLQMGANV-HARDDGGLIPLHNACSF 259
Query: 204 EHGLIVTVLLEFKADPMSLDYKGRTPIDFAS 296
H +V++LL ADP + D TP+ A+
Sbjct: 260 GHAEVVSLLLCQGADPNARDNWNYTPLHEAA 290
Score = 35.8 bits (81), Expect = 0.079
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +3
Query: 108 KEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPMSLDYKGRTPID 287
K+V + L+ K ANVN N TPLH A H ++ VL + A +LD G+T +
Sbjct: 538 KQVTELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDTLGQTALH 596
Query: 288 FAS 296
A+
Sbjct: 597 RAA 599
Score = 29.3 bits (64), Expect = 7.4
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 78 QLYMACFWGDKEVVKSLILKHANVN-HANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPM 254
+L A G++E + +L L NVN HA+ TPLH A IV +LL+ AD
Sbjct: 338 ELLEAARSGNEEKLMAL-LTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH 396
Query: 255 SLDYKGRTPI 284
+ D G P+
Sbjct: 397 AKDKGGLVPL 406
>sp|Q6W2J9|BCOR_HUMAN BCoR protein (BCL-6 corepressor)
Length = 1755
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/68 (41%), Positives = 37/68 (54%)
Frame = +3
Query: 75 CQLYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPM 254
C L+ AC G +V+ L+ A+VN + PLH AV N+H IV +LL + ADP
Sbjct: 1499 CALHEACARGWLNIVRHLLEYGADVN-CSAQDGTRPLHDAVENDHLEIVRLLLSYGADPT 1557
Query: 255 SLDYKGRT 278
Y GRT
Sbjct: 1558 LATYSGRT 1565
>sp|O55222|ILK_MOUSE Integrin-linked protein kinase
Length = 452
Score = 44.3 bits (103), Expect = 2e-04
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +3
Query: 81 LYMACFWGDKEVVKSLILKHANVNHANPVTLWTPLHAAVFNEHGLIVTVLLEFKADPMSL 260
L+ AC G VV+ LI++ A +N N TPLH A + H IV LL++KAD ++
Sbjct: 38 LHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQKLLQYKADTNAV 96
Query: 261 DYKGRTPIDFA 293
+ G P+ +A
Sbjct: 97 NEHGNVPLHYA 107
Score = 34.7 bits (78), Expect = 0.18
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 6 ELVETFLTEKISFNKLNEEEKINCQLYMACFWGDKEVVKSLILKHANVNHAN 161
++V+ L K N +NE N L+ ACFWG +V + L+ A V+ N
Sbjct: 81 DIVQKLLQYKADTNAVNEHG--NVPLHYACFWGQDQVAEDLVANGALVSICN 130
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,649,013
Number of Sequences: 369166
Number of extensions: 1308699
Number of successful extensions: 3683
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3630
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)