Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_J22
(275 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10301|YD48_SCHPO Hypothetical protein C22H10.08 in chro... 30 1.3
sp|Q6NVD0|FREM2_MOUSE FRAS1-related extracellular matrix pr... 30 2.3
sp|Q48153|HHUA_HAEIN Hemoglobin-haptoglobin binding protein... 29 3.0
sp|Q60296|T1SH_METJA Putative type I restriction enzyme Mja... 29 3.9
sp|P26685|RIR1_ASFM2 Ribonucleoside-diphosphate reductase l... 28 6.6
sp|P42491|RIR1_ASFB7 Ribonucleoside-diphosphate reductase l... 28 6.6
sp|P32843|RNA12_YEAST RNA12 protein 28 8.6
sp|Q58318|Y908_METJA Hypothetical protein MJ0908 28 8.6
sp|Q9ZA21|HGPA_HAEIN Hemoglobin and hemoglobin-haptoglobin ... 28 8.6
>sp|Q10301|YD48_SCHPO Hypothetical protein C22H10.08 in chromosome I
Length = 492
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 117 GQYIPGKLVEGWNEVFVAYGGAEHSKNYYEVLVESSILNHKG 242
G I G+L WN + H+K+YY VL+ S L+ G
Sbjct: 455 GSCIDGRLTSAWN-----WANNIHTKDYYRVLLMSGFLSFNG 491
>sp|Q6NVD0|FREM2_MOUSE FRAS1-related extracellular matrix protein 2 precursor (ECM3 homolog)
(NV domain containing protein 1)
Length = 3160
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 84 DQTFVARAKHEGQYIPGKLVEGWNEVFVAYGGAEHSKNYYEVLVE 218
D+ F +A+ + Q+ PG+ W ++ G EHS+ + VL E
Sbjct: 1804 DRDFKGKAQKQVQFNPGQTRASWRVRILSDGEHEHSETFQVVLSE 1848
>sp|Q48153|HHUA_HAEIN Hemoglobin-haptoglobin binding protein A precursor
(Hemoglobin-haptoglobin utilization protein A)
Length = 1046
Score = 29.3 bits (64), Expect = 3.0
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 3 YGTGVELCLSWVKANNGFIPPKAVRAGDQTFVA---RAKHEGQYIPGKLVEGWNEVFVAY 173
Y TG+ + + N+GF AVR D+ VA H+ + I +G+ E+F Y
Sbjct: 93 YETGITVVEAGRFGNSGF----AVRGVDENRVAVQIDGLHQAETISS---QGFKELFEGY 145
Query: 174 GGAEHSKNYYEVLVESSILNHKG 242
G +++N E+ + KG
Sbjct: 146 GNFNNTRNTAEIETLKQVTIRKG 168
>sp|Q60296|T1SH_METJA Putative type I restriction enzyme MjaXP specificity protein (S
protein) (S.MjaXP)
Length = 432
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -3
Query: 231 LKYLIPPKLRNNFYYVLRLRKLQKLHSSLQPIFQEYID--LRVLLLRQKSDHQLSQL 67
L YL + N + + LQK HS +QP+F++ I+ ++++L++ D L +L
Sbjct: 366 LPYLKISDIENKYIIIPPQPILQKFHSLVQPLFEKIINNQKQIMVLKKIRDALLPKL 422
>sp|P26685|RIR1_ASFM2 Ribonucleoside-diphosphate reductase large chain (Ribonucleotide
reductase)
Length = 779
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 6 GTGVELCLSWVKANNGFIPPKAVRA-GDQTFV 98
G G+ LCLS ++A N FI +R+ G Q ++
Sbjct: 220 GGGIGLCLSGIRAKNSFISGSGLRSNGIQNYI 251
>sp|P42491|RIR1_ASFB7 Ribonucleoside-diphosphate reductase large chain (Ribonucleotide
reductase)
Length = 778
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 6 GTGVELCLSWVKANNGFIPPKAVRA-GDQTFV 98
G G+ LCLS ++A N FI +R+ G Q ++
Sbjct: 219 GGGIGLCLSGIRAKNSFISGSGLRSNGIQNYI 250
>sp|P32843|RNA12_YEAST RNA12 protein
Length = 850
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -3
Query: 186 VLRLRKLQKLHSSLQPIFQEYIDLRVLLLRQKSDHQLSQ 70
+L ++LQ++ +SL+P+ +DL+ + R KS + S+
Sbjct: 640 ILNEKELQEIDASLEPLGGRMLDLQAFVRRVKSGEEPSE 678
>sp|Q58318|Y908_METJA Hypothetical protein MJ0908
Length = 1232
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Frame = +3
Query: 141 VEGWNEVFVAYGGAEHSKNYYEV-----------LVESSILNHKGYEWRWADGETY 275
+E + +V+V +GG + K YY V +E ++ N EW +G+ +
Sbjct: 1020 IEDFAKVYVEWGGYAYGKGYYGVEAKEEFINRLSKIELTVKNEDSQEWDIFEGDDF 1075
>sp|Q9ZA21|HGPA_HAEIN Hemoglobin and hemoglobin-haptoglobin binding protein A precursor
(Heme-repressible hemoglobin-binding protein) (Hgb)
Length = 1077
Score = 27.7 bits (60), Expect = 8.6
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 3 YGTGVELCLSWVKANNGFIPPKAVRAGDQTFVA---RAKHEGQYIPGKLVEGWNEVFVAY 173
Y TG+ + + N+GF AVR ++ VA H+ + I +G+ E+F Y
Sbjct: 121 YETGITVVEAGRFGNSGF----AVRGVEENRVAVQIDGLHQAETISS---QGFKELFEGY 173
Query: 174 GGAEHSKNYYEVLVESSILNHKG 242
G +++N E+ + KG
Sbjct: 174 GNFNNTRNSAEIETLKQVTIRKG 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,070,412
Number of Sequences: 369166
Number of extensions: 681049
Number of successful extensions: 1939
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1939
length of database: 68,354,980
effective HSP length: 61
effective length of database: 57,086,145
effective search space used: 1712584350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)