Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_J20
(330 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q57885|Y443_METJA Hypothetical protein MJ0443 32 0.58
sp|Q82570|RRP2_IAFOM RNA-directed RNA polymerase subunit P2... 31 0.76
sp|O34204|TOP1_FERIS DNA topoisomerase I (Omega-protein) (R... 29 2.9
sp|O46895|RK4_GUITH Chloroplast 50S ribosomal protein L4 29 3.8
sp|P13175|RRP2_IAZI1 RNA-directed RNA polymerase subunit P2... 29 3.8
sp|P13172|RRP2_IARUD RNA-directed RNA polymerase subunit P2... 29 3.8
sp|P15659|RRP2_IAWIL RNA-directed RNA polymerase subunit P2... 28 4.9
sp|P13178|RRP2_IATKM RNA-directed RNA polymerase subunit P2... 28 4.9
sp|P13174|RRP2_IAZH3 RNA-directed RNA polymerase subunit P2... 28 4.9
sp|P21427|RRP2_IAANN RNA-directed RNA polymerase subunit P2... 28 4.9
>sp|Q57885|Y443_METJA Hypothetical protein MJ0443
Length = 227
Score = 31.6 bits (70), Expect = 0.58
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 68 IKIPVTRLKPLKEKWDDIVKILVKELNLQCKADPTKRPLTVYLRSPSNDEVKLQKGIDFL 247
+KIP R+ L K ++ K + KEL ++ + D +T+Y D + + K D +
Sbjct: 19 LKIPKDRVGVLIGKKGNVKKTIEKELGVKLEID-ADGTVTIYGTDKQKDPLAVWKARDIV 77
Query: 248 NAFSKGFD 271
A +GF+
Sbjct: 78 RAIGRGFN 85
>sp|Q82570|RRP2_IAFOM RNA-directed RNA polymerase subunit P2 (Polymerase acidic protein)
(PA)
Length = 716
Score = 31.2 bits (69), Expect = 0.76
Identities = 14/64 (21%), Positives = 33/64 (51%)
Frame = +2
Query: 50 NLKTRNIKIPVTRLKPLKEKWDDIVKILVKELNLQCKADPTKRPLTVYLRSPSNDEVKLQ 229
N + + RL+P KW+ + + ++ L+ P RP+ +Y+R+ ++K++
Sbjct: 519 NFVSMEFSLTDPRLEP--HKWEKYCVLEIGDMLLRSAIAPVSRPMFLYVRTNGTSKIKMK 576
Query: 230 KGID 241
G++
Sbjct: 577 WGME 580
>sp|O34204|TOP1_FERIS DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
enzyme) (Swivelase)
Length = 699
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 5 IINFYLFLKMPNNFDNLKTRNIKIPVTRLKPLKEKWDDIVKILVKELN 148
++N YL + P+ D T ++ + ++ K+ W ++VK +KE N
Sbjct: 533 VVNHYLEQRFPDIVDKGFTAEMEKELDEVENGKKDWKEVVKSFLKEFN 580
>sp|O46895|RK4_GUITH Chloroplast 50S ribosomal protein L4
Length = 223
Score = 28.9 bits (63), Expect = 3.8
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Frame = +2
Query: 20 LFLKMPN----NFDNLKTRNIKIPVTRLKPLKEKWDDIVKILVKELNLQCKADPTKRPLT 187
L+LK N N DNL N+K + L K ++++ K+ + A+PT L
Sbjct: 124 LYLKSNNTKVINLDNLDFTNLKT-----RDLVIKCSNLIENYKKDQKILFVAEPTASGLW 178
Query: 188 VYLRSPSNDEVKLQKGIDFLNAFSKGFDFIDCVSL 292
Y+++ SN ++ G+D C +L
Sbjct: 179 RYVKNISNVDLIYTTGLDLKKILQAHHIIFTCKAL 213
>sp|P13175|RRP2_IAZI1 RNA-directed RNA polymerase subunit P2 (Polymerase acidic protein)
(PA)
Length = 716
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/64 (20%), Positives = 32/64 (50%)
Frame = +2
Query: 50 NLKTRNIKIPVTRLKPLKEKWDDIVKILVKELNLQCKADPTKRPLTVYLRSPSNDEVKLQ 229
N + + RL+P KW+ + + ++ L+ RP+ +Y+R+ ++K++
Sbjct: 519 NFVSMEFSLTDPRLEP--HKWEKYCVLEIGDMLLRTSIGQVSRPMFLYVRTNGTSKIKMK 576
Query: 230 KGID 241
G++
Sbjct: 577 WGME 580
>sp|P13172|RRP2_IARUD RNA-directed RNA polymerase subunit P2 (Polymerase acidic protein)
(PA)
Length = 716
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/64 (20%), Positives = 32/64 (50%)
Frame = +2
Query: 50 NLKTRNIKIPVTRLKPLKEKWDDIVKILVKELNLQCKADPTKRPLTVYLRSPSNDEVKLQ 229
N + + RL+P KW+ + + ++ L+ RP+ +Y+R+ ++K++
Sbjct: 519 NFVSMEFSLTDPRLEP--HKWEKYCVLEIGDMLLRTAVGQVSRPMFLYVRTNGTSKIKMK 576
Query: 230 KGID 241
G++
Sbjct: 577 WGME 580
>sp|P15659|RRP2_IAWIL RNA-directed RNA polymerase subunit P2 (Polymerase acidic protein)
(PA)
Length = 716
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = +2
Query: 50 NLKTRNIKIPVTRLKPLKEKWDDIVKILVKELNLQCKADPTKRPLTVYLRSPSNDEVKLQ 229
N + + RL+P KW+ + V ++ L+ RP+ +Y+R+ ++K++
Sbjct: 519 NFVSMEFSLTDPRLEP--HKWEKYCVLEVGDMLLRSAIGHVSRPMFLYVRTNGTSKIKMK 576
Query: 230 KGID 241
G++
Sbjct: 577 WGME 580
>sp|P13178|RRP2_IATKM RNA-directed RNA polymerase subunit P2 (Polymerase acidic protein)
(PA)
Length = 716
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/64 (20%), Positives = 32/64 (50%)
Frame = +2
Query: 50 NLKTRNIKIPVTRLKPLKEKWDDIVKILVKELNLQCKADPTKRPLTVYLRSPSNDEVKLQ 229
N + + RL+P KW+ + + ++ L+ RP+ +Y+R+ ++K++
Sbjct: 519 NFVSMEFSLTDPRLEP--HKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK 576
Query: 230 KGID 241
G++
Sbjct: 577 WGME 580
>sp|P13174|RRP2_IAZH3 RNA-directed RNA polymerase subunit P2 (Polymerase acidic protein)
(PA)
Length = 716
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/64 (20%), Positives = 32/64 (50%)
Frame = +2
Query: 50 NLKTRNIKIPVTRLKPLKEKWDDIVKILVKELNLQCKADPTKRPLTVYLRSPSNDEVKLQ 229
N + + RL+P KW+ + + ++ L+ RP+ +Y+R+ ++K++
Sbjct: 519 NFVSMEFSLTDPRLEP--HKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK 576
Query: 230 KGID 241
G++
Sbjct: 577 WGME 580
>sp|P21427|RRP2_IAANN RNA-directed RNA polymerase subunit P2 (Polymerase acidic protein)
(PA)
Length = 716
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/64 (20%), Positives = 32/64 (50%)
Frame = +2
Query: 50 NLKTRNIKIPVTRLKPLKEKWDDIVKILVKELNLQCKADPTKRPLTVYLRSPSNDEVKLQ 229
N + + RL+P KW+ + + ++ L+ RP+ +Y+R+ ++K++
Sbjct: 519 NFVSMEFSLTDPRLEP--HKWEKYCVLEIGDMLLRSAIGQVSRPMFLYVRTNGTSKIKMK 576
Query: 230 KGID 241
G++
Sbjct: 577 WGME 580
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,044,852
Number of Sequences: 369166
Number of extensions: 528422
Number of successful extensions: 1473
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1672315150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)