Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_J13
(262 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47943|IF4A_SCHPO Eukaryotic initiation factor 4A (eIF4A... 91 8e-19
sp|Q10055|IF4N_SCHPO Eukaryotic initiation factor 4A-12 (eI... 87 9e-18
sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II (e... 87 1e-17
sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II (e... 87 1e-17
sp|P38919|DDX48_HUMAN Probable ATP-dependent helicase DDX48... 87 2e-17
sp|Q91VC3|DDX48_MOUSE Probable ATP-dependent helicase DDX48... 87 2e-17
sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A (eIF4A... 87 2e-17
sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I (eI... 87 2e-17
sp|Q5R5F5|IF4A1_PONPY Eukaryotic initiation factor 4A-I (eI... 87 2e-17
sp|Q4R3Q1|DDX48_MACFA Probable ATP-dependent helicase DDX48... 87 2e-17
>sp|P47943|IF4A_SCHPO Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
Length = 392
Score = 90.9 bits (224), Expect = 8e-19
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = +3
Query: 3 VSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDLESYYSTHIEEMPM 182
VSLVINYDLP+NRENYIH V+INFVT DD+R ++++E +Y+THIEEMPM
Sbjct: 327 VSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPM 386
Query: 183 NIADLI 200
NIADLI
Sbjct: 387 NIADLI 392
>sp|Q10055|IF4N_SCHPO Eukaryotic initiation factor 4A-12 (eIF4A-12) (eIF-4A-12)
Length = 394
Score = 87.4 bits (215), Expect = 9e-18
Identities = 41/66 (62%), Positives = 49/66 (74%)
Frame = +3
Query: 3 VSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDLESYYSTHIEEMPM 182
VSLVINYDLP+NRENYIH VAINFVT +D+R L+D+E YYST I+EMPM
Sbjct: 329 VSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMPM 388
Query: 183 NIADLI 200
NI D++
Sbjct: 389 NIGDMV 394
>sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
sp|Q5R4X1|IF4A2_PONPY Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
Length = 407
Score = 87.0 bits (214), Expect = 1e-17
Identities = 41/66 (62%), Positives = 51/66 (77%)
Frame = +3
Query: 3 VSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDLESYYSTHIEEMPM 182
VSLVINYDLP+NRENYIH VAINFVT++D R L+D+E++Y+T +EEMPM
Sbjct: 342 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPM 401
Query: 183 NIADLI 200
N+ADLI
Sbjct: 402 NVADLI 407
>sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
Length = 408
Score = 87.0 bits (214), Expect = 1e-17
Identities = 41/66 (62%), Positives = 51/66 (77%)
Frame = +3
Query: 3 VSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDLESYYSTHIEEMPM 182
VSLVINYDLP+NRENYIH VAINFVT++D R L+D+E++Y+T +EEMPM
Sbjct: 343 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPM 402
Query: 183 NIADLI 200
N+ADLI
Sbjct: 403 NVADLI 408
>sp|P38919|DDX48_HUMAN Probable ATP-dependent helicase DDX48 (DEAD-box protein 48)
(Eukaryotic initiation factor 4A-like NUK-34) (Nuclear
matrix protein 265) (hNMP 265) (Eukaryotic translation
initiation factor 4A isoform 3)
Length = 411
Score = 86.7 bits (213), Expect = 2e-17
Identities = 42/66 (63%), Positives = 48/66 (72%)
Frame = +3
Query: 3 VSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDLESYYSTHIEEMPM 182
VSL+INYDLP+NRE YIH VAINFV DDIR L+D+E YYST I+EMPM
Sbjct: 346 VSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 405
Query: 183 NIADLI 200
N+ADLI
Sbjct: 406 NVADLI 411
>sp|Q91VC3|DDX48_MOUSE Probable ATP-dependent helicase DDX48 (DEAD-box protein 48)
Length = 411
Score = 86.7 bits (213), Expect = 2e-17
Identities = 42/66 (63%), Positives = 48/66 (72%)
Frame = +3
Query: 3 VSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDLESYYSTHIEEMPM 182
VSL+INYDLP+NRE YIH VAINFV DDIR L+D+E YYST I+EMPM
Sbjct: 346 VSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 405
Query: 183 NIADLI 200
N+ADLI
Sbjct: 406 NVADLI 411
>sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
Length = 402
Score = 86.7 bits (213), Expect = 2e-17
Identities = 43/66 (65%), Positives = 50/66 (75%)
Frame = +3
Query: 3 VSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDLESYYSTHIEEMPM 182
VSLVINYDLPSNRENYIH VAINFVT++D R L+++ESYY+T IEEMP
Sbjct: 337 VSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIESYYTTQIEEMPE 396
Query: 183 NIADLI 200
+IADLI
Sbjct: 397 SIADLI 402
>sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
Length = 406
Score = 86.7 bits (213), Expect = 2e-17
Identities = 41/66 (62%), Positives = 51/66 (77%)
Frame = +3
Query: 3 VSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDLESYYSTHIEEMPM 182
VSLVINYDLP+NRENYIH VAIN VT++D RTL+D+E++Y+T IEEMP+
Sbjct: 341 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPL 400
Query: 183 NIADLI 200
N+ADLI
Sbjct: 401 NVADLI 406
>sp|Q5R5F5|IF4A1_PONPY Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
Length = 406
Score = 86.7 bits (213), Expect = 2e-17
Identities = 41/66 (62%), Positives = 51/66 (77%)
Frame = +3
Query: 3 VSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDLESYYSTHIEEMPM 182
VSLVINYDLP+NRENYIH VAIN VT++D RTL+D+E++Y+T IEEMP+
Sbjct: 341 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPL 400
Query: 183 NIADLI 200
N+ADLI
Sbjct: 401 NVADLI 406
>sp|Q4R3Q1|DDX48_MACFA Probable ATP-dependent helicase DDX48 (DEAD-box protein 48)
Length = 411
Score = 86.7 bits (213), Expect = 2e-17
Identities = 42/66 (63%), Positives = 48/66 (72%)
Frame = +3
Query: 3 VSLVINYDLPSNRENYIHXXXXXXXXXXXXVAINFVTQDDIRTLQDLESYYSTHIEEMPM 182
VSL+INYDLP+NRE YIH VAINFV DDIR L+D+E YYST I+EMPM
Sbjct: 346 VSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 405
Query: 183 NIADLI 200
N+ADLI
Sbjct: 406 NVADLI 411
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,424,785
Number of Sequences: 369166
Number of extensions: 383783
Number of successful extensions: 976
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)