Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_I05
(773 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 527 e-149
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 525 e-149
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 525 e-149
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 525 e-149
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 525 e-149
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 524 e-149
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 523 e-148
sp|P52273|TBA_BOMMO Tubulin alpha chain 523 e-148
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 522 e-148
sp|P02550|TBA_PIG Tubulin alpha chain 522 e-148
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 527 bits (1357), Expect = e-149
Identities = 253/257 (98%), Positives = 257/257 (100%)
Frame = +3
Query: 3 VYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 182
+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL
Sbjct: 171 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 230
Query: 183 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 362
IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 290
Query: 363 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTG 542
ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 543 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 722
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 723 EGMEEGEFSEAREDLAA 773
EGMEEGEFSEAREDLAA
Sbjct: 411 EGMEEGEFSEAREDLAA 427
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 525 bits (1353), Expect = e-149
Identities = 252/257 (98%), Positives = 256/257 (99%)
Frame = +3
Query: 3 VYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 182
+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL
Sbjct: 171 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 230
Query: 183 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 362
IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAE
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 290
Query: 363 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTG 542
ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 543 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 722
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 723 EGMEEGEFSEAREDLAA 773
EGMEEGEFSEAREDLAA
Sbjct: 411 EGMEEGEFSEAREDLAA 427
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 525 bits (1352), Expect = e-149
Identities = 251/257 (97%), Positives = 257/257 (100%)
Frame = +3
Query: 3 VYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 182
+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL
Sbjct: 171 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 230
Query: 183 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 362
IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 290
Query: 363 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTG 542
ITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 543 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 722
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 723 EGMEEGEFSEAREDLAA 773
EGMEEGEFSEARED+AA
Sbjct: 411 EGMEEGEFSEAREDMAA 427
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 525 bits (1352), Expect = e-149
Identities = 252/257 (98%), Positives = 257/257 (100%)
Frame = +3
Query: 3 VYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 182
+YPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL
Sbjct: 171 IYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 230
Query: 183 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 362
IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAE
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAE 290
Query: 363 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTG 542
ITNACFEPANQMVKCDPRHGKYM+CCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 543 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 722
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 723 EGMEEGEFSEAREDLAA 773
EGMEEGEFSEAREDLAA
Sbjct: 411 EGMEEGEFSEAREDLAA 427
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 525 bits (1351), Expect = e-149
Identities = 252/257 (98%), Positives = 257/257 (100%)
Frame = +3
Query: 3 VYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 182
VYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERP+YTNLNRL
Sbjct: 171 VYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRL 230
Query: 183 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 362
IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 290
Query: 363 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTG 542
ITNACFEPANQ+VKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTG
Sbjct: 291 ITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 543 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 722
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 723 EGMEEGEFSEAREDLAA 773
EGMEEGEFSEAREDLAA
Sbjct: 411 EGMEEGEFSEAREDLAA 427
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 524 bits (1350), Expect = e-149
Identities = 252/257 (98%), Positives = 257/257 (100%)
Frame = +3
Query: 3 VYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 182
VYPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL
Sbjct: 171 VYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 230
Query: 183 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 362
IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+V+E
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSE 290
Query: 363 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTG 542
ITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 543 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 722
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 723 EGMEEGEFSEAREDLAA 773
EGMEEGEFSEAREDLAA
Sbjct: 411 EGMEEGEFSEAREDLAA 427
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 523 bits (1348), Expect = e-148
Identities = 251/257 (97%), Positives = 255/257 (99%)
Frame = +3
Query: 3 VYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 182
+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL
Sbjct: 171 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 230
Query: 183 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 362
IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHE LSVAE
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAE 290
Query: 363 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTG 542
ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 543 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 722
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 723 EGMEEGEFSEAREDLAA 773
EGMEEGEFSEAREDLAA
Sbjct: 411 EGMEEGEFSEAREDLAA 427
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 523 bits (1346), Expect = e-148
Identities = 251/257 (97%), Positives = 255/257 (99%)
Frame = +3
Query: 3 VYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 182
+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE PTYTNLNRL
Sbjct: 171 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEPPTYTNLNRL 230
Query: 183 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 362
IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAE
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 290
Query: 363 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTG 542
ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 543 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 722
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 723 EGMEEGEFSEAREDLAA 773
EGMEEGEFSEAREDLAA
Sbjct: 411 EGMEEGEFSEAREDLAA 427
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 522 bits (1344), Expect = e-148
Identities = 252/257 (98%), Positives = 255/257 (99%)
Frame = +3
Query: 3 VYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 182
VYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL
Sbjct: 171 VYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 230
Query: 183 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 362
IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAE
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 290
Query: 363 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTG 542
ITNACFEPANQMVK DPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 543 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 722
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 351 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 723 EGMEEGEFSEAREDLAA 773
EGMEEGEFSEAREDLAA
Sbjct: 411 EGMEEGEFSEAREDLAA 427
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 522 bits (1344), Expect = e-148
Identities = 249/257 (96%), Positives = 256/257 (99%)
Frame = +3
Query: 3 VYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 182
+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL
Sbjct: 171 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 230
Query: 183 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAE 362
IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPR HFPLATYAPVISAEKAYHEQLSVAE
Sbjct: 231 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAE 290
Query: 363 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTG 542
ITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTG
Sbjct: 291 ITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 350
Query: 543 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 722
FKVGINY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 351 FKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Query: 723 EGMEEGEFSEAREDLAA 773
EGMEEGEFSEARED+AA
Sbjct: 411 EGMEEGEFSEAREDMAA 427
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,785,932
Number of Sequences: 369166
Number of extensions: 2067996
Number of successful extensions: 5882
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5635
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)