Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_I01
(600 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 327 1e-89
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 327 2e-89
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 327 2e-89
sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin) 327 2e-89
sp|P02554|TBB_PIG Tubulin beta chain 326 2e-89
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 326 2e-89
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 325 4e-89
sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin cla... 325 4e-89
sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin) 325 7e-89
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 325 7e-89
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 327 bits (838), Expect = 1e-89
Identities = 159/161 (98%), Positives = 161/161 (100%)
Frame = +3
Query: 3 MPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 182
MPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV
Sbjct: 267 MPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 326
Query: 183 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFT 362
DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFT 386
Query: 363 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 485
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 327 bits (837), Expect = 2e-89
Identities = 158/161 (98%), Positives = 161/161 (100%)
Frame = +3
Query: 3 MPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 182
MPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV
Sbjct: 267 MPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 326
Query: 183 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFT 362
DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 363 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 485
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 327 bits (837), Expect = 2e-89
Identities = 158/161 (98%), Positives = 161/161 (100%)
Frame = +3
Query: 3 MPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 182
MPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV
Sbjct: 267 MPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 326
Query: 183 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFT 362
DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 363 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 485
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin)
Length = 292
Score = 327 bits (837), Expect = 2e-89
Identities = 158/161 (98%), Positives = 161/161 (100%)
Frame = +3
Query: 3 MPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 182
MPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV
Sbjct: 112 MPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 171
Query: 183 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFT 362
DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFT
Sbjct: 172 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 231
Query: 363 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 485
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 232 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 272
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 326 bits (836), Expect = 2e-89
Identities = 157/161 (97%), Positives = 161/161 (100%)
Frame = +3
Query: 3 MPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 182
MPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEV
Sbjct: 267 MPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEV 326
Query: 183 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFT 362
DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 363 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 485
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 326 bits (836), Expect = 2e-89
Identities = 157/161 (97%), Positives = 161/161 (100%)
Frame = +3
Query: 3 MPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 182
MPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEV
Sbjct: 267 MPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEV 326
Query: 183 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFT 362
DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 363 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 485
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 325 bits (834), Expect = 4e-89
Identities = 157/161 (97%), Positives = 161/161 (100%)
Frame = +3
Query: 3 MPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 182
MPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEV
Sbjct: 267 MPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 326
Query: 183 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFT 362
DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 363 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 485
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin class-I)
Length = 445
Score = 325 bits (834), Expect = 4e-89
Identities = 157/161 (97%), Positives = 161/161 (100%)
Frame = +3
Query: 3 MPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 182
MPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEV
Sbjct: 267 MPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 326
Query: 183 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFT 362
DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 363 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 485
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin)
Length = 447
Score = 325 bits (832), Expect = 7e-89
Identities = 156/161 (96%), Positives = 161/161 (100%)
Frame = +3
Query: 3 MPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 182
MPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV
Sbjct: 267 MPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 326
Query: 183 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFT 362
DEQMLN+QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 363 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 485
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQE 427
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 325 bits (832), Expect = 7e-89
Identities = 156/161 (96%), Positives = 160/161 (99%)
Frame = +3
Query: 3 MPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 182
MPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEV
Sbjct: 267 MPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEV 326
Query: 183 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFT 362
DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM+ TFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFT 386
Query: 363 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 485
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,346,797
Number of Sequences: 369166
Number of extensions: 1000071
Number of successful extensions: 3314
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3190
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)