Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_H20
(198 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25417|CYTB_BOVIN Cystatin B (Stefin B) 32 0.60
sp|Q28988|CYTA1_PIG Cystatin A1 (Stefin A1) 30 1.3
sp|P35479|CPI1_PIG Leukocyte cysteine proteinase inhibitor ... 30 1.7
sp|Q28987|CYTA8_PIG Cystatin A8 (Stefin A8) 29 3.0
sp|Q28986|CYTA5_PIG Cystatin A5 (Stefin A5) 29 3.0
sp|Q8WNR9|CYTA_FELCA Cystatin A (Allergen Fel d 3) 28 5.1
>sp|P25417|CYTB_BOVIN Cystatin B (Stefin B)
Length = 98
Score = 31.6 bits (70), Expect = 0.60
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 61 MLCGGTGNVRTPSEEEKTILLTVKPQIEDQIGHSCSAFDILQLRSQ 198
M+CGGT + + E + I VK Q+E++ F L+ +SQ
Sbjct: 1 MMCGGTSATQPATAETQAIADKVKSQLEEKENKKFPVFKALEFKSQ 46
>sp|Q28988|CYTA1_PIG Cystatin A1 (Stefin A1)
Length = 103
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 55 NRMLCGGTGNVRTPSEEEKTILLTVKPQIEDQIGHSCSAFDILQLRSQ 198
++M+ GG R + E + I TVK Q+E++ + F+ ++ +SQ
Sbjct: 4 DKMMPGGLTEARPATPEIQEIATTVKSQLEEKTNKTYEKFEAVEYKSQ 51
>sp|P35479|CPI1_PIG Leukocyte cysteine proteinase inhibitor 1 (PLCPI) (Stefin D1)
Length = 103
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 61 MLCGGTGNVRTPSEEEKTILLTVKPQIEDQIGHSCSAFDILQLRSQ 198
ML GG R + E + I VKPQ+E++ + F+ + RSQ
Sbjct: 6 MLAGGLTEPRPATPEIQEIANKVKPQLEEKTNKTYEKFEAIIYRSQ 51
>sp|Q28987|CYTA8_PIG Cystatin A8 (Stefin A8)
Length = 103
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 61 MLCGGTGNVRTPSEEEKTILLTVKPQIEDQIGHSCSAFDILQLRSQ 198
ML GG R + E + I VKPQ+E++ + F+ + RSQ
Sbjct: 6 MLAGGLTEPRPATPEIQEIANKVKPQLEEKTKKTYEKFEAIIYRSQ 51
>sp|Q28986|CYTA5_PIG Cystatin A5 (Stefin A5)
Length = 103
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 61 MLCGGTGNVRTPSEEEKTILLTVKPQIEDQIGHSCSAFDILQLRSQ 198
ML GG R + E + I VKPQ+E++ + F+ + RSQ
Sbjct: 6 MLAGGLTEPRPATPEIQEIANKVKPQLEEKTKKTYEKFEAIIYRSQ 51
>sp|Q8WNR9|CYTA_FELCA Cystatin A (Allergen Fel d 3)
Length = 98
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 61 MLCGGTGNVRTPSEEEKTILLTVKPQIEDQIGHSCSAFDILQLRSQ 198
M+ GG + + E + I VKPQ+E++ + F+ ++ ++Q
Sbjct: 1 MIPGGLSEAKPATPEIQEIANEVKPQLEEKTNETYQKFEAIEYKTQ 46
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,481,179
Number of Sequences: 369166
Number of extensions: 279177
Number of successful extensions: 640
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 68,354,980
effective HSP length: 37
effective length of database: 61,519,785
effective search space used: 1722553980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)