Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_H16-2
(485 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 34 0.20
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 32 1.0
sp|P18933|NU6M_DROME NADH-ubiquinone oxidoreductase chain 6... 31 1.7
sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen) 31 1.7
sp|Q9K8G8|SYV_BACHD Valyl-tRNA synthetase (Valine--tRNA lig... 30 2.3
sp|Q09733|YA4G_SCHPO Hypothetical protein C31A2.16 in chrom... 30 3.9
sp|P09915|MTBR_BPRH1 Modification methylase Rho11sI (Cytosi... 30 3.9
sp|P08987|GTFB_STRMU Glucosyltransferase-I precursor (GTF-I... 30 3.9
sp|Q99MB1|TLR3_MOUSE Toll-like receptor 3 precursor 30 3.9
sp|P07709|NU6M_DROYA NADH-ubiquinone oxidoreductase chain 6... 29 5.0
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 33.9 bits (76), Expect = 0.20
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 287 EILDLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFEKLRKK 412
+I + + DL+R D K IS++L N K +SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 31.6 bits (70), Expect = 1.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 279 RLFTVENILSGIVCSSVSKRPPTIFVSGNPDSNL 178
RL + N+L C ++S PP + VSGN D +
Sbjct: 424 RLLKLGNVLRDFTCVNLSDSPPNLMVSGNMDGRV 457
>sp|P18933|NU6M_DROME NADH-ubiquinone oxidoreductase chain 6 (NADH dehydrogenase subunit
6)
Length = 174
Score = 30.8 bits (68), Expect = 1.7
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -3
Query: 480 IYSSVFTSTFAFTPALRSTSLKYFFLNFSKLYPFLF-KSFNNLLILCNLAGSLSNLNKSF 304
IY + S F +++ T L F + F+ K+ ++L ++ N S+ N+N F
Sbjct: 67 IYVTSLASNEMFNLSMKLTLFSSLILIFMLILSFIMDKTSSSLFLMNNDMQSIINMNSYF 126
Query: 303 TKSRISFNRLF 271
++ +S N+L+
Sbjct: 127 MENSLSLNKLY 137
>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
Length = 2022
Score = 30.8 bits (68), Expect = 1.7
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 200 LTNIVGGLLDTLEQ--TIPLNIFSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLNDL 373
LTN + L T+ Q TI I + LNE L DL L+ A+++ K++ND
Sbjct: 1675 LTNRLNSLEKTVSQQRTIETEIRQQLSLALNERNTLQNDLRDLQRRLARMETEKKIMND- 1733
Query: 374 NRKGYSFEKLRKKYFRDVDL 433
K EK+R + ++L
Sbjct: 1734 --KYDELEKIRASLIKRIEL 1751
>sp|Q9K8G8|SYV_BACHD Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 880
Score = 30.4 bits (67), Expect = 2.3
Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Frame = +2
Query: 197 PLTNIVGGLLDTLEQTIPLNIFSTVKSLLN--EILDLVKDLLRLESDPAKLQR-ISKLLN 367
P T ++G ++ E+++ N+ S V+ L +LDL +++ RLE + KL++ + ++
Sbjct: 780 PSTLVMGTAIEKPEKSMS-NVLSGVELYLPLAGLLDLEEEIARLEKEENKLEKEVERVQK 838
Query: 368 DLNRKGY-------SFEKLRKKYFRDVDLSAGVKAKV 457
L+ +G+ E+ RKK ++ A V+A++
Sbjct: 839 KLSNQGFLAKAPEKVIEEERKKEADYLEKRAAVRARI 875
>sp|Q09733|YA4G_SCHPO Hypothetical protein C31A2.16 in chromosome I
Length = 1101
Score = 29.6 bits (65), Expect = 3.9
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 435 LRSTSLKYFFLNFSKLY--PFLFKSFNNLLILCNLAGSLSNLNKSFTKSRISF 283
LR L Y +N +L PF ++F++L + NL L + N S KSR+SF
Sbjct: 679 LREACLNYL-INIKRLLLCPFSNRNFSSLDLYSNLIQHLLSANSSPRKSRLSF 730
>sp|P09915|MTBR_BPRH1 Modification methylase Rho11sI (Cytosine-specific methyltransferase
Rho11sI) (Bsu P11s) (M.Rho11sI)
Length = 503
Score = 29.6 bits (65), Expect = 3.9
Identities = 22/82 (26%), Positives = 39/82 (47%)
Frame = -3
Query: 471 SVFTSTFAFTPALRSTSLKYFFLNFSKLYPFLFKSFNNLLILCNLAGSLSNLNKSFTKSR 292
S+F+ AF ALR+ ++Y + FS++ + KS+ C + + LN S+
Sbjct: 8 SLFSGIGAFEAALRNIGVEYELVGFSEIDKYAIKSY------CAIHNADEQLNFG-DVSK 60
Query: 291 ISFNRLFTVENILSGIVCSSVS 226
I +L + ++ G C S S
Sbjct: 61 IDKKKLPEFDLLVGGSPCQSFS 82
>sp|P08987|GTFB_STRMU Glucosyltransferase-I precursor (GTF-I) (Dextransucrase) (Sucrose
6-glucosyltransferase)
Length = 1476
Score = 29.6 bits (65), Expect = 3.9
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +2
Query: 200 LTNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLNDLNR 379
+TN + D +T + +S +++ +E+ DL++D+++ E +P N
Sbjct: 535 ITNSLVNRTDDNAETAAVPSYSFIRAHDSEVQDLIRDIIKAEINP-------------NV 581
Query: 380 KGYSF--EKLRKKY-FRDVDLSAGVKAKVDVNT 469
GYSF E+++K + + DL A K NT
Sbjct: 582 VGYSFTMEEIKKAFEIYNKDLLATEKKYTHYNT 614
>sp|Q99MB1|TLR3_MOUSE Toll-like receptor 3 precursor
Length = 905
Score = 29.6 bits (65), Expect = 3.9
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -3
Query: 483 NIYSSVFTSTFAFTPALRSTSLKYFFLNFSKLYPFLFKSFNNLLILCNLAGSLSNLNKSF 304
N V +F++ P+LR SL+Y N +L P F +NL L +L ++F
Sbjct: 285 NNLHDVGNGSFSYLPSLRYLSLEY--NNIQRLSPRSFYGLSNLRYL--------SLKRAF 334
Query: 303 TKSRIS 286
TK +S
Sbjct: 335 TKQSVS 340
>sp|P07709|NU6M_DROYA NADH-ubiquinone oxidoreductase chain 6 (NADH dehydrogenase subunit
6)
Length = 174
Score = 29.3 bits (64), Expect = 5.0
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -3
Query: 480 IYSSVFTSTFAFTPALRSTSLKYFFLNFSKLYPFLF-KSFNNLLILCNLAGSLSNLNKSF 304
IY + S F +++ T F L F + + K+ L ++ N S+ +N F
Sbjct: 67 IYVTSLASNEMFNLSIKLTLFSMFILFFMFILSMILDKTSITLFLMNNEMQSIIEMNSYF 126
Query: 303 TKSRISFNRLF 271
T++ +S N+L+
Sbjct: 127 TENSLSLNKLY 137
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,322,711
Number of Sequences: 369166
Number of extensions: 627208
Number of successful extensions: 2266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2266
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)