Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_H15
(665 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 332 5e-91
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 332 7e-91
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 331 1e-90
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 328 1e-89
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 326 4e-89
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 325 7e-89
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 325 7e-89
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 325 7e-89
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 325 9e-89
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 325 9e-89
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 332 bits (851), Expect = 5e-91
Identities = 158/191 (82%), Positives = 175/191 (91%)
Frame = +3
Query: 3 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDN 182
LPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP +TTEVKSVEMHHEAL+EALPGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDN 307
Query: 183 VGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAH 362
VGFN+KNVSVK+IRRGNVC DSKSDP ++A F +QVII+NHPG+I AGYSPV+DCHTAH
Sbjct: 308 VGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAH 367
Query: 363 IACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVR 542
IACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVR
Sbjct: 368 IACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVR 427
Query: 543 DMKQTVAVGVI 575
DM+QTVAVGVI
Sbjct: 428 DMRQTVAVGVI 438
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 332 bits (850), Expect = 7e-91
Identities = 156/191 (81%), Positives = 177/191 (92%)
Frame = +3
Query: 3 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDN 182
LPLQDVYKIGGIGTVPVGRVETGILKPGM+VTFAPQ LTTEVKSVEMHHEAL EALPGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGILKPGMIVTFAPQNLTTEVKSVEMHHEALQEALPGDN 307
Query: 183 VGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAH 362
VGFN+KN+S+K+IRRG+V SDSK+DPA++ F AQVIIMNHPG+I AGY+PVLDCHTAH
Sbjct: 308 VGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAH 367
Query: 363 IACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVR 542
IACKFAEL +K+DRRSGK +ED PK KSGDAG++ L+P+KP+CVETF+EYPPLGRFAVR
Sbjct: 368 IACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVR 427
Query: 543 DMKQTVAVGVI 575
DM+QTVAVGVI
Sbjct: 428 DMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 331 bits (848), Expect = 1e-90
Identities = 157/191 (82%), Positives = 175/191 (91%)
Frame = +3
Query: 3 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDN 182
LPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP +TTEVKSVEMHHEAL+EALPGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDN 307
Query: 183 VGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAH 362
VGFN+KNVSVK+IRRGNVC DSK+DP ++A F +QVII+NHPG+I AGYSPV+DCHTAH
Sbjct: 308 VGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAH 367
Query: 363 IACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVR 542
IACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVR
Sbjct: 368 IACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVR 427
Query: 543 DMKQTVAVGVI 575
DM+QTVAVGVI
Sbjct: 428 DMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 328 bits (840), Expect = 1e-89
Identities = 156/191 (81%), Positives = 172/191 (90%)
Frame = +3
Query: 3 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDN 182
LPLQDVYKIGGIGTVPVGRVETG+LKPGM+VTFAP +TTEVKSVEMHHEAL EALPGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALVEALPGDN 307
Query: 183 VGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAH 362
VGFN+KN+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVLDCHTAH
Sbjct: 308 VGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAH 367
Query: 363 IACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVR 542
IACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVETFS+YPPLGRFAVR
Sbjct: 368 IACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVR 427
Query: 543 DMKQTVAVGVI 575
DM+QTVAVGVI
Sbjct: 428 DMRQTVAVGVI 438
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 326 bits (835), Expect = 4e-89
Identities = 155/191 (81%), Positives = 172/191 (90%)
Frame = +3
Query: 3 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDN 182
LPLQDVYKIGGIGTVPVGRVETG+LKPGM+VTFAP +TTEVKSVEMHHEAL EALPGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALQEALPGDN 307
Query: 183 VGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAH 362
VGFN+KN+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVLDCHTAH
Sbjct: 308 VGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAH 367
Query: 363 IACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVR 542
IACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAVR
Sbjct: 368 IACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVR 427
Query: 543 DMKQTVAVGVI 575
DM+QTVAVGVI
Sbjct: 428 DMRQTVAVGVI 438
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 325 bits (833), Expect = 7e-89
Identities = 156/191 (81%), Positives = 173/191 (90%)
Frame = +3
Query: 3 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDN 182
LPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+EALPGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDN 307
Query: 183 VGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAH 362
VGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PVLDCHTAH
Sbjct: 308 VGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAH 367
Query: 363 IACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVR 542
IACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVR
Sbjct: 368 IACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVR 427
Query: 543 DMKQTVAVGVI 575
DM+QTVAVGVI
Sbjct: 428 DMRQTVAVGVI 438
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 325 bits (833), Expect = 7e-89
Identities = 156/191 (81%), Positives = 173/191 (90%)
Frame = +3
Query: 3 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDN 182
LPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+EALPGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDN 307
Query: 183 VGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAH 362
VGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PVLDCHTAH
Sbjct: 308 VGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAH 367
Query: 363 IACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVR 542
IACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVR
Sbjct: 368 IACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVR 427
Query: 543 DMKQTVAVGVI 575
DM+QTVAVGVI
Sbjct: 428 DMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 325 bits (833), Expect = 7e-89
Identities = 152/191 (79%), Positives = 175/191 (91%)
Frame = +3
Query: 3 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDN 182
LPLQDVYKIGGIGTVPVGRVETG++K GMVVTFAP +TTEVKSVEMHHE L E LPGDN
Sbjct: 246 LPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPANVTTEVKSVEMHHEQLVEGLPGDN 305
Query: 183 VGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAH 362
VGFN+KNVSVK+IRRGNVCSDSK+DPA++A F AQVI++NHPG+I AGY+PVLDCHTAH
Sbjct: 306 VGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAH 365
Query: 363 IACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVR 542
IACKFAEL++KIDRRSGK LED PK KSGD+ +V+++PSKPMCVE +++YPPLGRFAVR
Sbjct: 366 IACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVR 425
Query: 543 DMKQTVAVGVI 575
DM+QTVAVGVI
Sbjct: 426 DMRQTVAVGVI 436
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 325 bits (832), Expect = 9e-89
Identities = 155/191 (81%), Positives = 173/191 (90%)
Frame = +3
Query: 3 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDN 182
LPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+EALPGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDN 307
Query: 183 VGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAH 362
VGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PVLDCHTAH
Sbjct: 308 VGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAH 367
Query: 363 IACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVR 542
IACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAVR
Sbjct: 368 IACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVR 427
Query: 543 DMKQTVAVGVI 575
DM+QTVAVGVI
Sbjct: 428 DMRQTVAVGVI 438
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 325 bits (832), Expect = 9e-89
Identities = 153/191 (80%), Positives = 176/191 (92%)
Frame = +3
Query: 3 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDN 182
LPLQDVYKIGGIGTVPVGRVETGI+KPGMVVTFAPQ +TTEVKSVEMHHE+L EA+PGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDN 307
Query: 183 VGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAH 362
VGFN+KNVSVK+IRRG+VCSDSK DPA++A F AQVIIMNHPG+I GY+PVLDCHTAH
Sbjct: 308 VGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAH 367
Query: 363 IACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVR 542
IACKF EL +K+DRR+GK +EDFPK KSGDAG+V L+P+KP+CVE+F++Y PLGRFAVR
Sbjct: 368 IACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVR 427
Query: 543 DMKQTVAVGVI 575
DM+QTVAVGVI
Sbjct: 428 DMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,186,773
Number of Sequences: 369166
Number of extensions: 1549787
Number of successful extensions: 5166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4874
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)