Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_H05
(662 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q38924|PPAF_ARATH Iron(III)-zinc(II) purple acid phospha... 86 1e-16
sp|P80366|PPAF_PHAVU Iron(III)-zinc(II) purple acid phospha... 80 6e-15
sp||Q687E1_2 [Segment 2 of 2] Nucleotide pyrophosphatase/ph... 63 8e-10
sp|Q12546|PPA_ASPFI Acid phosphatase precursor (pH 6-optimu... 60 7e-09
sp|Q50644|YP77_MYCTU Hypothetical protein Rv2577/MT2654 34 0.39
sp|Q49161|ACDA1_METMA Acetyl-CoA decarbonylase/synthase com... 33 0.67
sp|O80324|RNS6_PYRPY Ribonuclease S-6 precursor (S6-RNase) 31 2.5
sp|Q9MB14|PPO2_IPOBA Polyphenol oxidase II, chloroplast pre... 31 3.3
sp|Q62559|IFT52_MOUSE Intraflagellar transport 52 homolog (... 30 4.3
sp|P43309|PPO_MALDO Polyphenol oxidase, chloroplast precurs... 30 4.3
>sp|Q38924|PPAF_ARATH Iron(III)-zinc(II) purple acid phosphatase precursor (PAP)
Length = 469
Score = 85.5 bits (210), Expect = 1e-16
Identities = 56/187 (29%), Positives = 82/187 (43%), Gaps = 5/187 (2%)
Frame = +3
Query: 21 QYNWLLNDLKEANKPENRAVRPWIIAIGHRPMYCSNSDDGQHCENLINSIRVGMPISVHR 200
QY WL +L+ N+ E PW+I + H P Y S VH
Sbjct: 295 QYKWLEKELQGVNRTET----PWLIVLVHSPFYSSY---------------------VHH 329
Query: 201 Y--GSMFVFGLEKLFYDYGVDLIFGAHEHSYERMWPVYNL--KVCNGTEAPYTDPPAPVH 368
Y G E+ F Y VD++F H H+YER V N+ + NG P +D AP++
Sbjct: 330 YMEGETLRVMYEQWFVKYKVDVVFAGHVHAYERSERVSNIAYNIVNGLCEPISDESAPIY 389
Query: 369 IVTGSAGNQEG-EDPFYANKPDWSAFHSSDYGYTRMNIMNSSHMYLEQVSDDLGGAVIDK 545
I G GN EG +P +SAF + +G+ + I N +H Y + G AV
Sbjct: 390 ITIGDGGNSEGLLTDMMQPQPKYSAFREASFGHGLLEIKNRTHAYFSWNRNQDGNAVAAD 449
Query: 546 ILYIRNK 566
+++ N+
Sbjct: 450 SVWLLNR 456
>sp|P80366|PPAF_PHAVU Iron(III)-zinc(II) purple acid phosphatase (PAP)
Length = 432
Score = 79.7 bits (195), Expect = 6e-15
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 3/186 (1%)
Frame = +3
Query: 21 QYNWLLNDLKEANKPENRAVRPWIIAIGHRPMYCSNSDDGQHCENLINSIRVGMPISVHR 200
QY WL +L++ + E PW+I + H P+Y NS + E
Sbjct: 262 QYTWLKKELRKVKRSET----PWLIVLMHSPLY--NSYNHHFME---------------- 299
Query: 201 YGSMFVFGLEKLFYDYGVDLIFGAHEHSYERMWPVYNL--KVCNGTEAPYTDPPAPVHIV 374
G E F Y VD++F H H+YER V N+ K+ +G P D APV+I
Sbjct: 300 -GEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVYIT 358
Query: 375 TGSAGNQEGEDP-FYANKPDWSAFHSSDYGYTRMNIMNSSHMYLEQVSDDLGGAVIDKIL 551
G AGN D +P++SAF + +G+ +I N +H + + G AV +
Sbjct: 359 IGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSV 418
Query: 552 YIRNKH 569
+ N+H
Sbjct: 419 WFFNRH 424
>sp||Q687E1_2 [Segment 2 of 2] Nucleotide pyrophosphatase/phosphodiesterase
Length = 350
Score = 62.8 bits (151), Expect = 8e-10
Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 5/187 (2%)
Frame = +3
Query: 45 LKEANKPENRAVRPWIIAIGHRPM-YCSNS---DDGQHCENLINSIRVGMPISVHRYGSM 212
++E +R +PW+I HR + Y SNS D G E
Sbjct: 175 IEECLSTVDRKHQPWLIFTAHRVLGYSSNSWYADQGSFEEPEGRE--------------- 219
Query: 213 FVFGLEKLFYDYGVDLIFGAHEHSYERMWPVYNLKVCNGTEAPYTDP-PAPVHIVTGSAG 389
L+KL+ Y VD+ + H H+YER P+Y + N + Y+ + +V G G
Sbjct: 220 ---SLQKLWQRYRVDIAYFGHVHNYERTCPLYQSQCVNADKTHYSGTMNGTIFVVAGGGG 276
Query: 390 NQEGEDPFYANKPDWSAFHSSDYGYTRMNIMNSSHMYLEQVSDDLGGAVIDKILYIRNKH 569
+ + P WS F DYG+T++ N S + E + G V D I +
Sbjct: 277 SHLSS--YTTAIPKWSIFRDHDYGFTKLTAFNHSSLLFEYMKSS-DGKVYDSFT-IHRDY 332
Query: 570 GQIFNCV 590
+ +CV
Sbjct: 333 RDVLSCV 339
>sp|Q12546|PPA_ASPFI Acid phosphatase precursor (pH 6-optimum acid phosphatase) (APase6)
Length = 614
Score = 59.7 bits (143), Expect = 7e-09
Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 9/192 (4%)
Frame = +3
Query: 21 QYNWLLNDLKEANKPENRAVRPWIIAIGHRPMYCSNSDDGQHCENLINSIRVGMPISVHR 200
Q++WL DL + + R+ PW+I + HRPMY S +
Sbjct: 440 QWHWLQQDLAKVD----RSKTPWVIVMSHRPMYSS---------------------AYSS 474
Query: 201 YGSMFVFGLEKLFYDYGVDLIFGAHEHSYERMWP------VYNLKVCNGTEAPYTDPPAP 362
Y E L YGVD H H YER++P + + N + +
Sbjct: 475 YQLHVREAFEGLLLKYGVDAYLSGHIHWYERLYPLGANGTIDTAAIVNNNTYYAHNGKSI 534
Query: 363 VHIVTGSAGNQEGEDPFYANKPDWSAFHSSD---YGYTRMNIMNSSHMYLEQVSDDLGGA 533
HI+ G AGN E F + + D YG++++ I N + + E + D G
Sbjct: 535 THIINGMAGNIESHSEFSDGEGLTNITALLDKVHYGFSKLTIFNETALKWELIRGD-DGT 593
Query: 534 VIDKILYIRNKH 569
V D + ++ H
Sbjct: 594 VGDSLTLLKPSH 605
>sp|Q50644|YP77_MYCTU Hypothetical protein Rv2577/MT2654
Length = 529
Score = 33.9 bits (76), Expect = 0.39
Identities = 35/125 (28%), Positives = 43/125 (34%), Gaps = 43/125 (34%)
Frame = +3
Query: 234 LFYDYGVDLIFGAHEHSYERMWPVYNLKVCNGTEAPYTDPPAP--------------VHI 371
LF Y VDL+ HEH YER P L+ GT+ T P P VH+
Sbjct: 372 LFDQYQVDLVVCGHEHHYERSHP---LRGALGTD---TRTPIPVDTRSDLIDSTRGTVHL 425
Query: 372 VTGSAGNQEGE-------------------DPFYANKPD--------WSAFHSSD--YGY 464
V G G + DP KP WSAF D YG+
Sbjct: 426 VIGGGGTSKPTNALLFPQPRCQVITGVGDFDPAIRRKPSIFVLEDAPWSAFRDRDNPYGF 485
Query: 465 TRMNI 479
++
Sbjct: 486 VAFDV 490
>sp|Q49161|ACDA1_METMA Acetyl-CoA decarbonylase/synthase complex alpha subunit 1 (ACDS
complex alpha subunit 1) (ACDS complex carbon monoxide
dehydrogenase 1) (ACDS CODH 1)
Length = 806
Score = 33.1 bits (74), Expect = 0.67
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Frame = +3
Query: 246 YGVDLIFGAHEHSYER----------MWPVYNLKVCNGTEAPYTDPPAPVHIVTGSAGNQ 395
YG+ + GAH Y R W VY+ + NG E P PPAP ++T + Q
Sbjct: 648 YGIPAVLGAHSSKYRRALIAKNYDESKWKVYDAR--NGEEMPI--PPAPEFLLTTAETWQ 703
Query: 396 E 398
E
Sbjct: 704 E 704
>sp|O80324|RNS6_PYRPY Ribonuclease S-6 precursor (S6-RNase)
Length = 229
Score = 31.2 bits (69), Expect = 2.5
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 279 HSYERMWPVYNLKVCNGTEAPYTDPPAPVHIVTGS-AGNQEGEDPFY 416
++Y + Y VCN P DPP + V G N G+DP Y
Sbjct: 28 YNYFQFTQQYQPAVCNSNPTPCKDPPDKLFTVHGLWPSNDVGDDPIY 74
>sp|Q9MB14|PPO2_IPOBA Polyphenol oxidase II, chloroplast precursor (PPO-II) (Catechol
oxidase II)
Length = 588
Score = 30.8 bits (68), Expect = 3.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 237 FYDYGVDLIFGAHEHSYERMWPVYNLKVCNGTEAPYTD 350
FY G D++F H + +RMW ++ G +TD
Sbjct: 353 FYSAGRDILFYCHHSNVDRMWTIWQQLGGKGRRRDFTD 390
>sp|Q62559|IFT52_MOUSE Intraflagellar transport 52 homolog (Protein NGD5)
Length = 426
Score = 30.4 bits (67), Expect = 4.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 411 FYANKPDWSAFHSSDYGYTRMNIMNSSHMYLEQVSD 518
F N+P + +HS + G+ ++ ++ S HM+ +Q D
Sbjct: 191 FPLNRPILAFYHSKNQGFGKLAVLGSCHMFSDQYLD 226
>sp|P43309|PPO_MALDO Polyphenol oxidase, chloroplast precursor (PPO) (Catechol oxidase)
Length = 593
Score = 30.4 bits (67), Expect = 4.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 237 FYDYGVDLIFGAHEHSYERMWPVYNLKVCNGTEAPYTD 350
FY G D IF AH + +RMW ++ K G TD
Sbjct: 348 FYSAGRDPIFFAHHSNVDRMWSIW--KTLGGKRTDLTD 383
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,404,963
Number of Sequences: 369166
Number of extensions: 1665066
Number of successful extensions: 4332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4321
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5560129980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)