Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_G22
(907 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q92538|GBF1_HUMAN Golgi-specific brefeldin A-resistance ... 32 3.2
sp|P42308|CITN_BACSU Citrate transporter 30 7.1
sp|O75448|TR100_HUMAN Thyroid hormone receptor-associated p... 30 7.1
>sp|Q92538|GBF1_HUMAN Golgi-specific brefeldin A-resistance guanine nucleotide exchange
factor 1 (BFA-resistant GEF 1)
Length = 1859
Score = 31.6 bits (70), Expect = 3.2
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +2
Query: 470 SNPHQLTSLHVFIMLNLAL--VHIRQNRVADCKSMLHRITSEASAVLNQCYCLQAANFYV 643
+NPH + V I + L L V + VA C+++L I E L Q ++ N Y
Sbjct: 415 TNPHDRHNSEVMIHMGLHLLTVALESAPVAQCQTLLGLIKDEMCRHLFQLLSIERLNLYA 474
Query: 644 HSFLAFCERRYQDSKSYLRAVLRM 715
S L C ++ + +L+ + M
Sbjct: 475 AS-LRVCFLLFESMREHLKFQMEM 497
>sp|P42308|CITN_BACSU Citrate transporter
Length = 426
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +2
Query: 695 LRAVLRMTNLEDLNRLTAAGLMTLGQIFMNI-----SNSDVNSPVLIESKEIIQPVIP 853
+RA+L + +NRL AG+ LG MNI + V + + +++ E+ P+IP
Sbjct: 122 IRAMLPLYKRLGMNRLVLAGIAMLGSGVMNIIPWGEPTARVLASLKLDTSEVFTPLIP 179
>sp|O75448|TR100_HUMAN Thyroid hormone receptor-associated protein complex 100 kDa
component (Trap100) (Thyroid hormone receptor associated
protein 4) (Vitamin D3 receptor-interacting protein
complex component DRIP100) (Activator-recruited cofactor
100 kDa component) (ARC100)
Length = 989
Score = 30.4 bits (67), Expect = 7.1
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 653 LAFCERRYQDSKSYL--RAVLRMTNLEDLNRLTAA--GLMTLGQIFMNISNSDVNS 808
LA C +R + + S RA+L + LE+ + TA L+ LG+I N+SN + S
Sbjct: 158 LAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLSNPQLRS 213
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,492,435
Number of Sequences: 369166
Number of extensions: 1958148
Number of successful extensions: 4186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4186
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)