Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_G18
(879 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01879|TOP2_PICGU DNA topoisomerase 2 (DNA topoisomerase... 35 0.36
sp|Q9W5D0|Y34F_DROME Hypothetical protein CG12467 in chromo... 35 0.36
sp|O43093|KINH_SYNRA Kinesin heavy chain (Synkin) 33 0.80
sp|P21613|KINH_LOLPE Kinesin heavy chain 32 2.3
sp|P20482|CNC_DROME Segmentation protein cap'n'collar 32 2.3
sp|Q9PWM3|HXC4A_BRARE Homeobox protein Hox-C4a (Hox-C4) 32 3.0
sp|Q10921|YWQ1_CAEEL Hypothetical protein B0286.1 in chromo... 32 3.0
sp|P48467|KINH_NEUCR Kinesin heavy chain 32 3.0
sp|Q9Z0K6|SCRG1_RAT Scrapie-responsive protein 1 precursor ... 32 3.0
sp|Q09771|ATF31_SCHPO Transcription factor atf31 31 5.2
>sp|Q01879|TOP2_PICGU DNA topoisomerase 2 (DNA topoisomerase II)
Length = 389
Score = 34.7 bits (78), Expect = 0.36
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Frame = +1
Query: 7 ARGQRCRERKIEKKETLQKEINTINQKSRKY-LDLAEEILKAWKERLRSLDE--KLPGHN 177
AR + + RK E Q ++ +++++R L + +++ A K+RL +D+ KL
Sbjct: 13 ARLELYQRRKDMMAENFQNQLTRLSEQARFIKLIIEKKLTIANKKRLEMVDDLKKLKFTR 72
Query: 178 FKPQFSVVEFEQLIEACSLRNNENSEAGDTGSPRSSVVDPIMINPIKQE-------YVLG 336
F V E L+EA L E AGD +V P + K E Y+LG
Sbjct: 73 FNKNGKPVHDEPLVEAEELAEEEEEAAGDISQLNLGLVAPEDESQYKPETTYSQYDYLLG 132
Query: 337 QTI 345
I
Sbjct: 133 MAI 135
>sp|Q9W5D0|Y34F_DROME Hypothetical protein CG12467 in chromosome 1
Length = 1561
Score = 34.7 bits (78), Expect = 0.36
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = +1
Query: 229 SLRNNENSEAGDTGSPRSSVVDPIMINPIKQEYVLGQTIVNQNTSNSPFMTCGKVEQYCQ 408
S N E S +G SP S+ ++P K+ + S SP +V +
Sbjct: 482 STDNTETSTSGSASSPSKSLKTSSSLSPAKR-----------SGSESPKNAKARVHIQSR 530
Query: 409 NSYINDLQPSSNINSHFDP-YHHHHSYGNES 498
S PSS IN H P H HH+ N++
Sbjct: 531 TS----TTPSSRINQHLQPSQHQHHTLSNQN 557
>sp|O43093|KINH_SYNRA Kinesin heavy chain (Synkin)
Length = 935
Score = 33.5 bits (75), Expect = 0.80
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = +1
Query: 28 ERKIEKKETLQKEINTINQKSRKYLDLAEEILKAWKERLRSLD-------EKLPGHNFKP 186
ER +E+ +QK++ N +K + LAE L A ER++SL+ +KL N K
Sbjct: 803 ERNLEQLTNVQKQLVEQNASLKKEVALAERKLIARNERIQSLETLLHNAQDKLLNQNKKF 862
Query: 187 QFSVVEFEQLIEACSLRNNENSEA 258
+ + + +E + ++NS A
Sbjct: 863 EQQLATVRERLEQARSQKSQNSLA 886
>sp|P21613|KINH_LOLPE Kinesin heavy chain
Length = 967
Score = 32.0 bits (71), Expect = 2.3
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Frame = +1
Query: 49 ETLQKEINTINQKSRKYLDLAEEILKAWKERLRSLDEK---LPGHNFKPQFSVVEFEQLI 219
E LQ++++ I + D +E+L+A +E + D+K + N + + E Q +
Sbjct: 462 ENLQQDMSRIQADNESAKDEVKEVLQALEELAMNYDQKSQEVEDKNKENENLSEELNQKL 521
Query: 220 EACSLRNNENSEAGDTGSPRSSVVDPIMINPIKQEYVLGQTIVNQNTSNS 369
+ NE + D+ V +MIN +K +G TIV N + +
Sbjct: 522 STLNSLQNELDQLKDSSMHHRKRVTDMMINLLKDLGDIG-TIVGGNAAET 570
>sp|P20482|CNC_DROME Segmentation protein cap'n'collar
Length = 1383
Score = 32.0 bits (71), Expect = 2.3
Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 10/177 (5%)
Frame = +1
Query: 1 NSARGQRCRERKIEKKETLQKEINTINQKSRKYLDLAEEILKAWKERLRSLDEKLPGHNF 180
N Q CR+RK+++ TL+ E+N + K + L+ + L++ ++R+ + L H F
Sbjct: 1205 NKVAAQNCRKRKLDQILTLEDEVNAV-VKRKTQLNQDRDHLESERKRISNKFAMLHRHVF 1263
Query: 181 K----PQFSV-----VEFEQLIE-ACSLRNNENSEAGDTGSPRSSVVDPIMINPIKQEYV 330
+ P+ + +Q + + L E SE +T + S+ V + +V
Sbjct: 1264 QYLRDPEGNPCSPADYSLQQAADGSVYLLpreKSEGNNTATAASNAVSSASGGSL-NGHV 1322
Query: 331 LGQTIVNQNTSNSPFMTCGKVEQYCQNSYINDLQPSSNINSHFDPYHHHHSYGNESG 501
Q ++ + S+ G Q+ Q S + H HH S + G
Sbjct: 1323 PTQAPMHSHQSH------GMQAQHVVGGMSQQQQQQSRLPPHLQQQHHLQSQQQQPG 1373
>sp|Q9PWM3|HXC4A_BRARE Homeobox protein Hox-C4a (Hox-C4)
Length = 268
Score = 31.6 bits (70), Expect = 3.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 328 VLGQTIVNQNTSNSPFMTCGKVEQYCQNSYINDLQPSSNINSHFDPYHHHH 480
++ +++ N + F C E+Y QNSYI + P + Y HHH
Sbjct: 2 IMSSYLMDSNYIDPKFPPC---EEYSQNSYIPEHSPEYYSRARDSGYQHHH 49
>sp|Q10921|YWQ1_CAEEL Hypothetical protein B0286.1 in chromosome II
Length = 230
Score = 31.6 bits (70), Expect = 3.0
Identities = 22/80 (27%), Positives = 44/80 (55%)
Frame = +1
Query: 22 CRERKIEKKETLQKEINTINQKSRKYLDLAEEILKAWKERLRSLDEKLPGHNFKPQFSVV 201
C+ K E KE +KE N ++ S+K ++ E+ + KE++ L+EK+ +N+ + S +
Sbjct: 65 CQTLKEEPKEQ-KKENNKNDENSKKTIEKYEQEIAGLKEKIEGLEEKVK-NNYSDENSSL 122
Query: 202 EFEQLIEACSLRNNENSEAG 261
+ E ++ C R + + G
Sbjct: 123 KEE--LKQCETRIRQLTGGG 140
>sp|P48467|KINH_NEUCR Kinesin heavy chain
Length = 928
Score = 31.6 bits (70), Expect = 3.0
Identities = 25/89 (28%), Positives = 41/89 (46%)
Frame = +1
Query: 28 ERKIEKKETLQKEINTINQKSRKYLDLAEEILKAWKERLRSLDEKLPGHNFKPQFSVVEF 207
ER +E+ +Q+++ N +K + +AE L A ER++SL+ L K + +F
Sbjct: 791 ERNLEQLTQVQRQLVEQNSALKKEVAIAERKLMARNERIQSLESLLQESQEKMAQANHKF 850
Query: 208 EQLIEACSLRNNENSEAGDTGSPRSSVVD 294
E + A + EA GS R D
Sbjct: 851 EVQLAAV----KDRLEAAKAGSTRGLGTD 875
>sp|Q9Z0K6|SCRG1_RAT Scrapie-responsive protein 1 precursor (ScRG-1)
Length = 98
Score = 31.6 bits (70), Expect = 3.0
Identities = 21/53 (39%), Positives = 26/53 (49%)
Frame = -2
Query: 320 CLIGLIIIGSTTELLGEPVSPASEFSLLRKLHASINCSNSTTENCGLKLCPGN 162
C++ L+I+G T LLG P+S S RKL NC N LKL N
Sbjct: 4 CVV-LVILGLTL-LLGTQAMPSSRLSCYRKLLKDRNCHNLPEGRADLKLIDEN 54
>sp|Q09771|ATF31_SCHPO Transcription factor atf31
Length = 209
Score = 30.8 bits (68), Expect = 5.2
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +1
Query: 1 NSARGQRCRERKIEKKETLQKEINTINQKSRKYL----DLAEEILK 126
N Q+CR +K + +TLQ ++N ++++ L DL EEI+K
Sbjct: 131 NRQAAQKCRIKKKKYLQTLQDQVNYYTSENKELLQSANDLREEIIK 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,154,414
Number of Sequences: 369166
Number of extensions: 1984166
Number of successful extensions: 5840
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5774
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)