Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_G10
(221 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08093|RL2_SCHPO 60S ribosomal protein L2 (K5) (K37) (KD4) 101 6e-22
sp|P62919|RL8_RAT 60S ribosomal protein L8 >gi|51702824|sp|... 101 6e-22
sp|P41116|RL8_XENLA 60S ribosomal protein L8 101 6e-22
sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8 101 6e-22
sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8 101 6e-22
sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 101 6e-22
sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8 101 6e-22
sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8 100 8e-22
sp|P41569|RL8_AEDAL 60S ribosomal protein L8 100 8e-22
sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8 100 2e-21
>sp|P08093|RL2_SCHPO 60S ribosomal protein L2 (K5) (K37) (KD4)
Length = 253
Score = 101 bits (251), Expect = 6e-22
Identities = 42/59 (71%), Positives = 49/59 (83%)
Frame = +1
Query: 7 CWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 183
CWPR RGV MNPVDHPHGGGNHQH+G +TV R + PG+KVGL+AARRTGLLRG ++
Sbjct: 194 CWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRGAAAVE 252
>sp|P62919|RL8_RAT 60S ribosomal protein L8
sp|P62918|RL8_MOUSE 60S ribosomal protein L8
sp|P62917|RL8_HUMAN 60S ribosomal protein L8
Length = 257
Score = 101 bits (251), Expect = 6e-22
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1
Query: 7 CWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 183
CWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 195 CWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|P41116|RL8_XENLA 60S ribosomal protein L8
Length = 257
Score = 101 bits (251), Expect = 6e-22
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1
Query: 7 CWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 183
CWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 195 CWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8
Length = 260
Score = 101 bits (251), Expect = 6e-22
Identities = 45/62 (72%), Positives = 51/62 (82%)
Frame = +1
Query: 10 WPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIKTT 189
WPRVRGV MNPV+HPHGGGNHQHIG PSTV R G+KVGL+AARRTG +RG K +K T
Sbjct: 196 WPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAARRTGRIRGGKPVKFT 255
Query: 190 KQ 195
K+
Sbjct: 256 KE 257
>sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8
Length = 257
Score = 101 bits (251), Expect = 6e-22
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1
Query: 7 CWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 183
CWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 195 CWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8
Length = 257
Score = 101 bits (251), Expect = 6e-22
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1
Query: 7 CWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 183
CWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 195 CWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8
Length = 257
Score = 101 bits (251), Expect = 6e-22
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1
Query: 7 CWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 183
CWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 195 CWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8
Length = 261
Score = 100 bits (250), Expect = 8e-22
Identities = 44/56 (78%), Positives = 48/56 (85%)
Frame = +1
Query: 7 CWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 174
CWP+VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AARRTG +RG K
Sbjct: 195 CWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8
Length = 261
Score = 100 bits (250), Expect = 8e-22
Identities = 44/56 (78%), Positives = 48/56 (85%)
Frame = +1
Query: 7 CWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 174
CWP+VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AARRTG +RG K
Sbjct: 195 CWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8
Length = 257
Score = 99.8 bits (247), Expect = 2e-21
Identities = 43/59 (72%), Positives = 48/59 (81%)
Frame = +1
Query: 7 CWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 183
CWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+A RRTG LRGTK ++
Sbjct: 195 CWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAVRRTGRLRGTKTVQ 253
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,837,065
Number of Sequences: 369166
Number of extensions: 522100
Number of successful extensions: 1539
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 68,354,980
effective HSP length: 45
effective length of database: 60,041,905
effective search space used: 1681173340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)