Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_G06
(688 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P12717|ACTM_PISOC Actin, muscle 258 8e-69
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 258 8e-69
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 258 8e-69
sp|O17320|ACT_CRAGI Actin 258 8e-69
sp|P41339|ACTA_LIMPO Actin, acrosomal process isoform (Acti... 258 1e-68
sp|P92176|ACT2_LUMTE Actin-2 258 1e-68
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 258 1e-68
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 258 1e-68
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 258 1e-68
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 258 1e-68
>sp|P12717|ACTM_PISOC Actin, muscle
Length = 376
Score = 258 bits (660), Expect = 8e-69
Identities = 158/247 (63%), Positives = 171/247 (69%), Gaps = 18/247 (7%)
Frame = +1
Query: 1 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 180
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 181 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE*M 360
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 361 TQIMFELSMLRLCTLQFKRCCRYMHLVEQLVLY------WIL------VME*LTPYQSMR 504
TQIMFE F Y+ + L LY I+ V + Y+
Sbjct: 121 TQIMFE---------TFNSPAMYVAIQAVLSLYASGRTTGIVFDTGDGVSHTVPIYEGYA 171
Query: 505 LCSSTCYFEIRSCWRDLTDY**DSY-RRGTVHTQL--KRIVRDIK-RTC-TSL*LMQN-E 666
L + ++ RDLTDY RG T + IVRDIK + C T+L Q +
Sbjct: 172 LPHAILRLDLAG--RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYTALDFEQEMQ 229
Query: 667 TASASSS 687
TAS+SSS
Sbjct: 230 TASSSSS 236
Score = 80.9 bits (198), Expect = 3e-15
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = +3
Query: 378 TFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 503
TFN+PAMYVAIQAVLSLYASGRTTGIV D+GDGV+HTVPIYE
Sbjct: 127 TFNSPAMYVAIQAVLSLYASGRTTGIVFDTGDGVSHTVPIYE 168
Score = 35.8 bits (81), Expect = 0.11
Identities = 18/28 (64%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +2
Query: 503 GYALPHAILRLDLAG-EILPIIDEILTD 583
GYALPHAILRLDLAG ++ + +ILT+
Sbjct: 169 GYALPHAILRLDLAGRDLTDYLMKILTE 196
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 258 bits (660), Expect = 8e-69
Identities = 155/247 (62%), Positives = 168/247 (68%), Gaps = 18/247 (7%)
Frame = +1
Query: 1 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 180
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 181 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE*M 360
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 361 TQIMFELSMLRLCTLQFKRCCRYMHLVEQLVLYWI-----LVME-------*LTPYQSMR 504
TQIMFE F Y+ + L LY +VM+ + Y+
Sbjct: 121 TQIMFE---------TFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYA 171
Query: 505 LCSSTCYFEIRSCWRDLTDY**DSY-RRGTVHTQL--KRIVRDIKRTCTSL*L---MQNE 666
L + ++ RDLTDY RG T + IVRDIK + L + +
Sbjct: 172 LPHAIMRLDLAG--RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQ 229
Query: 667 TASASSS 687
TAS SSS
Sbjct: 230 TASTSSS 236
Score = 84.0 bits (206), Expect = 3e-16
Identities = 40/42 (95%), Positives = 41/42 (97%)
Frame = +3
Query: 378 TFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 503
TFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYE
Sbjct: 127 TFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYE 168
Score = 35.0 bits (79), Expect = 0.19
Identities = 17/28 (60%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +2
Query: 503 GYALPHAILRLDLAG-EILPIIDEILTD 583
GYALPHAI+RLDLAG ++ + +ILT+
Sbjct: 169 GYALPHAIMRLDLAGRDLTDYLMKILTE 196
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 258 bits (660), Expect = 8e-69
Identities = 155/247 (62%), Positives = 168/247 (68%), Gaps = 18/247 (7%)
Frame = +1
Query: 1 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 180
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 181 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE*M 360
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 361 TQIMFELSMLRLCTLQFKRCCRYMHLVEQLVLYWI-----LVME-------*LTPYQSMR 504
TQIMFE F Y+ + L LY +VM+ + Y+
Sbjct: 121 TQIMFE---------TFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYA 171
Query: 505 LCSSTCYFEIRSCWRDLTDY**DSY-RRGTVHTQL--KRIVRDIKRTCTSL*L---MQNE 666
L + ++ RDLTDY RG T + IVRDIK + L + +
Sbjct: 172 LPHAIMRLDLAG--RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQ 229
Query: 667 TASASSS 687
TAS SSS
Sbjct: 230 TASTSSS 236
Score = 84.0 bits (206), Expect = 3e-16
Identities = 40/42 (95%), Positives = 41/42 (97%)
Frame = +3
Query: 378 TFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 503
TFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYE
Sbjct: 127 TFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYE 168
Score = 35.0 bits (79), Expect = 0.19
Identities = 17/28 (60%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +2
Query: 503 GYALPHAILRLDLAG-EILPIIDEILTD 583
GYALPHAI+RLDLAG ++ + +ILT+
Sbjct: 169 GYALPHAIMRLDLAGRDLTDYLMKILTE 196
>sp|O17320|ACT_CRAGI Actin
Length = 376
Score = 258 bits (660), Expect = 8e-69
Identities = 155/246 (63%), Positives = 168/246 (68%), Gaps = 17/246 (6%)
Frame = +1
Query: 1 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 180
M DED+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MGDEDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 181 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE*M 360
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 361 TQIMFELSMLRLCTLQFKRCCRYMHLVEQLVLY-------WIL-----VME*LTPYQSMR 504
TQIMFE F Y+ + L LY +L V + Y+
Sbjct: 121 TQIMFE---------TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYA 171
Query: 505 LCSSTCYFEIRSCWRDLTDY**DSY-RRGTVHTQL--KRIVRDIK-RTC-TSL*LMQNET 669
L + ++ RDLTDY RG T + IVRDIK + C +L Q T
Sbjct: 172 LPHAIMRLDLAG--RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMT 229
Query: 670 ASASSS 687
+ASSS
Sbjct: 230 TAASSS 235
Score = 83.6 bits (205), Expect = 5e-16
Identities = 40/42 (95%), Positives = 42/42 (100%)
Frame = +3
Query: 378 TFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 503
TFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYE
Sbjct: 127 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 168
Score = 35.0 bits (79), Expect = 0.19
Identities = 17/28 (60%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +2
Query: 503 GYALPHAILRLDLAG-EILPIIDEILTD 583
GYALPHAI+RLDLAG ++ + +ILT+
Sbjct: 169 GYALPHAIMRLDLAGRDLTDYLMKILTE 196
>sp|P41339|ACTA_LIMPO Actin, acrosomal process isoform (Actin-5)
Length = 376
Score = 258 bits (659), Expect = 1e-68
Identities = 124/126 (98%), Positives = 124/126 (98%)
Frame = +1
Query: 1 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 180
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 181 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE*M 360
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 361 TQIMFE 378
TQIMFE
Sbjct: 121 TQIMFE 126
Score = 83.2 bits (204), Expect = 6e-16
Identities = 40/42 (95%), Positives = 41/42 (97%)
Frame = +3
Query: 378 TFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 503
TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYE
Sbjct: 127 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 168
Score = 35.8 bits (81), Expect = 0.11
Identities = 18/28 (64%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +2
Query: 503 GYALPHAILRLDLAG-EILPIIDEILTD 583
GYALPHAILRLDLAG ++ + +ILT+
Sbjct: 169 GYALPHAILRLDLAGRDLTDYLMKILTE 196
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 258 bits (659), Expect = 1e-68
Identities = 155/247 (62%), Positives = 168/247 (68%), Gaps = 18/247 (7%)
Frame = +1
Query: 1 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 180
M++EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MAEEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 181 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE*M 360
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 361 TQIMFELSMLRLCTLQFKRCCRYMHLVEQLVLY-------WIL-----VME*LTPYQSMR 504
TQIMFE F Y+ + L LY +L V + Y+
Sbjct: 121 TQIMFE---------TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 171
Query: 505 LCSSTCYFEIRSCWRDLTDY**DSY-RRGTVHTQL--KRIVRDIKRTCTSL*L---MQNE 666
L + ++ RDLTDY RG T + IVRDIK + L +
Sbjct: 172 LPHAILRLDLAG--RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMN 229
Query: 667 TASASSS 687
TASASSS
Sbjct: 230 TASASSS 236
Score = 85.1 bits (209), Expect = 2e-16
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = +3
Query: 378 TFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 503
TFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE
Sbjct: 127 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 168
Score = 35.8 bits (81), Expect = 0.11
Identities = 18/28 (64%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +2
Query: 503 GYALPHAILRLDLAG-EILPIIDEILTD 583
GYALPHAILRLDLAG ++ + +ILT+
Sbjct: 169 GYALPHAILRLDLAGRDLTDYLMKILTE 196
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 258 bits (659), Expect = 1e-68
Identities = 124/126 (98%), Positives = 124/126 (98%)
Frame = +1
Query: 1 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 180
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 181 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE*M 360
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 361 TQIMFE 378
TQIMFE
Sbjct: 121 TQIMFE 126
Score = 84.0 bits (206), Expect = 3e-16
Identities = 40/42 (95%), Positives = 41/42 (97%)
Frame = +3
Query: 378 TFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 503
TFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYE
Sbjct: 127 TFNTPAMYVAIQAVLSLYASGRTTGIVIDSGDGVTHTVPIYE 168
Score = 35.0 bits (79), Expect = 0.19
Identities = 17/28 (60%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +2
Query: 503 GYALPHAILRLDLAG-EILPIIDEILTD 583
GYALPHAI+RLDLAG ++ + +ILT+
Sbjct: 169 GYALPHAIMRLDLAGRDLTDYLMKILTE 196
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 258 bits (659), Expect = 1e-68
Identities = 124/126 (98%), Positives = 124/126 (98%)
Frame = +1
Query: 1 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 180
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 181 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE*M 360
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 361 TQIMFE 378
TQIMFE
Sbjct: 121 TQIMFE 126
Score = 84.7 bits (208), Expect = 2e-16
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +3
Query: 378 TFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 503
TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE
Sbjct: 127 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 168
Score = 35.0 bits (79), Expect = 0.19
Identities = 17/28 (60%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +2
Query: 503 GYALPHAILRLDLAG-EILPIIDEILTD 583
GYALPHAI+RLDLAG ++ + +ILT+
Sbjct: 169 GYALPHAIMRLDLAGRDLTDYLMKILTE 196
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 258 bits (659), Expect = 1e-68
Identities = 124/126 (98%), Positives = 124/126 (98%)
Frame = +1
Query: 1 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 180
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 181 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE*M 360
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 361 TQIMFE 378
TQIMFE
Sbjct: 121 TQIMFE 126
Score = 84.7 bits (208), Expect = 2e-16
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +3
Query: 378 TFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 503
TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE
Sbjct: 127 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 168
Score = 35.0 bits (79), Expect = 0.19
Identities = 17/28 (60%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +2
Query: 503 GYALPHAILRLDLAG-EILPIIDEILTD 583
GYALPHAI+RLDLAG ++ + +ILT+
Sbjct: 169 GYALPHAIMRLDLAGRDLTDYLMKILTE 196
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 258 bits (659), Expect = 1e-68
Identities = 124/126 (98%), Positives = 124/126 (98%)
Frame = +1
Query: 1 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 180
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 181 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE*M 360
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 361 TQIMFE 378
TQIMFE
Sbjct: 121 TQIMFE 126
Score = 84.7 bits (208), Expect = 2e-16
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +3
Query: 378 TFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 503
TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE
Sbjct: 127 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 168
Score = 35.0 bits (79), Expect = 0.19
Identities = 17/28 (60%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +2
Query: 503 GYALPHAILRLDLAG-EILPIIDEILTD 583
GYALPHAI+RLDLAG ++ + +ILT+
Sbjct: 169 GYALPHAIMRLDLAGRDLTDYLMKILTE 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,463,038
Number of Sequences: 369166
Number of extensions: 1793422
Number of successful extensions: 6150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6055
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5879188535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)