Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_E17
(602 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A (Microtubu... 142 5e-34
sp|P46867|KLP68_DROME Kinesin-like protein KLP68D 142 5e-34
sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A (Microtubu... 142 5e-34
sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit (KRP-85/95 ... 140 3e-33
sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B (Microtubu... 139 6e-33
sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B (Microtubu... 139 6e-33
sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 (... 138 9e-33
sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit (KRP-85/95 ... 138 1e-32
sp|P33176|KINH_HUMAN Kinesin heavy chain (Ubiquitous kinesi... 135 1e-31
sp|Q61768|KINH_MOUSE Kinesin heavy chain (Ubiquitous kinesi... 135 1e-31
>sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A (Microtubule plus end-directed kinesin
motor 3A)
Length = 701
Score = 142 bits (359), Expect = 5e-34
Identities = 79/165 (47%), Positives = 111/165 (67%), Gaps = 6/165 (3%)
Frame = +3
Query: 6 VASTKMNAESSRSHLIISIMLTCHLKNSE---NIIRGKISIIDLAGSERVSKSGVQGVGA 176
V +T MN SSRSH I +I + C K + ++ GK+ ++DLAGSER +K+G G
Sbjct: 208 VGATNMNEHSSRSHAIFTITIECSEKGVDGNMHVRMGKLHLVDLAGSERQAKTGATGQRL 267
Query: 177 QEAMCINLSLSALGDVISALTSGQQ-FIPYRNNKLTLLMQDSIGGNAKTLMIVHVSPTEY 353
+EA INLSLS LG+VISAL G+ +PYRN+KLT L+QDS+GGN+KT+M ++ P +Y
Sbjct: 268 KEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADY 327
Query: 354 NYVETINSLTYGARVKLIKNESTKSFDSEEA--PRLMKIIEHLKR 482
NY ETI++L Y R K IKN++ + D ++A + K IE LK+
Sbjct: 328 NYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKK 372
>sp|P46867|KLP68_DROME Kinesin-like protein KLP68D
Length = 784
Score = 142 bits (359), Expect = 5e-34
Identities = 77/161 (47%), Positives = 106/161 (65%), Gaps = 2/161 (1%)
Frame = +3
Query: 6 VASTKMNAESSRSHLIISIMLTCHLKNSENIIRGKISIIDLAGSERVSKSGVQGVGAQEA 185
V T MN SSRSH I I + + I GK+++IDLAGSER SK+G +EA
Sbjct: 211 VGFTNMNEHSSRSHAIFMIKIEMCDTETNTIKVGKLNLIDLAGSERQSKTGASAERLKEA 270
Query: 186 MCINLSLSALGDVISALTSGQQFIPYRNNKLTLLMQDSIGGNAKTLMIVHVSPTEYNYVE 365
INL+LS+LG+VISAL +PYR++KLT L+QDS+GGN+KT+MI ++ P+ YNY E
Sbjct: 271 SKINLALSSLGNVISALAESSPHVPYRDSKLTRLLQDSLGGNSKTIMIANIGPSNYNYNE 330
Query: 366 TINSLTYGARVKLIKNESTKSFDSEEA--PRLMKIIEHLKR 482
T+ +L YG+R K I+N+ K+ D ++A + IE LKR
Sbjct: 331 TLTTLRYGSRAKSIQNQPIKNEDPQDAKLKEYQEEIERLKR 371
>sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A (Microtubule plus end-directed kinesin
motor 3A)
Length = 702
Score = 142 bits (359), Expect = 5e-34
Identities = 79/165 (47%), Positives = 111/165 (67%), Gaps = 6/165 (3%)
Frame = +3
Query: 6 VASTKMNAESSRSHLIISIMLTCHLKNSE---NIIRGKISIIDLAGSERVSKSGVQGVGA 176
V +T MN SSRSH I +I + C K + ++ GK+ ++DLAGSER +K+G G
Sbjct: 208 VGATNMNEHSSRSHAIFTITIECSEKGIDGNMHVRMGKLHLVDLAGSERQAKTGATGQRL 267
Query: 177 QEAMCINLSLSALGDVISALTSGQQ-FIPYRNNKLTLLMQDSIGGNAKTLMIVHVSPTEY 353
+EA INLSLS LG+VISAL G+ +PYRN+KLT L+QDS+GGN+KT+M ++ P +Y
Sbjct: 268 KEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADY 327
Query: 354 NYVETINSLTYGARVKLIKNESTKSFDSEEA--PRLMKIIEHLKR 482
NY ETI++L Y R K IKN++ + D ++A + K IE LK+
Sbjct: 328 NYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKK 372
>sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit (KRP-85/95 85 kDa subunit)
Length = 699
Score = 140 bits (352), Expect = 3e-33
Identities = 81/165 (49%), Positives = 109/165 (66%), Gaps = 6/165 (3%)
Frame = +3
Query: 6 VASTKMNAESSRSHLIISIMLT---CHLKNSENIIRGKISIIDLAGSERVSKSGVQGVGA 176
V +T MN SSRSH I +I L L +++ GK+ ++DLAGSER +K+G G
Sbjct: 205 VGATNMNESSSRSHAIFTITLERSDMGLDKEQHVRVGKLHMVDLAGSERQTKTGATGQRL 264
Query: 177 QEAMCINLSLSALGDVISALTSGQQ-FIPYRNNKLTLLMQDSIGGNAKTLMIVHVSPTEY 353
+EA INLSLS LG+VIS+L G+ IPYRN+KLT L+QDS+GGNAKT+M ++ P EY
Sbjct: 265 KEATKINLSLSTLGNVISSLVDGKSTHIPYRNSKLTRLLQDSLGGNAKTVMCANIGPAEY 324
Query: 354 NYVETINSLTYGARVKLIKNESTKSFDSEEA--PRLMKIIEHLKR 482
NY ETI++L Y R K IKN++ + D ++A K IE LK+
Sbjct: 325 NYDETISTLRYANRAKNIKNKAKINEDPKDALLREFQKEIEELKK 369
>sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B (Microtubule plus end-directed kinesin
motor 3B) (HH0048)
Length = 747
Score = 139 bits (350), Expect = 6e-33
Identities = 79/151 (52%), Positives = 104/151 (68%), Gaps = 4/151 (2%)
Frame = +3
Query: 6 VASTKMNAESSRSHLIISIMLTCHLK--NSENIIR-GKISIIDLAGSERVSKSGVQGVGA 176
V +T MN SSRSH I I + C + EN IR GK++++DLAGSER +K+G QG
Sbjct: 203 VGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERL 262
Query: 177 QEAMCINLSLSALGDVISALTSGQQ-FIPYRNNKLTLLMQDSIGGNAKTLMIVHVSPTEY 353
+EA INLSLSALG+VISAL G+ IPYR++KLT L+QDS+GGNAKT+M+ +V P Y
Sbjct: 263 KEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASY 322
Query: 354 NYVETINSLTYGARVKLIKNESTKSFDSEEA 446
N ET+ +L Y R K IKN+ + D ++A
Sbjct: 323 NVEETLTTLRYANRAKNIKNKPRVNEDPKDA 353
>sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B (Microtubule plus end-directed kinesin
motor 3B)
Length = 747
Score = 139 bits (350), Expect = 6e-33
Identities = 79/151 (52%), Positives = 104/151 (68%), Gaps = 4/151 (2%)
Frame = +3
Query: 6 VASTKMNAESSRSHLIISIMLTCHLK--NSENIIR-GKISIIDLAGSERVSKSGVQGVGA 176
V +T MN SSRSH I I + C + EN IR GK++++DLAGSER +K+G QG
Sbjct: 203 VGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERL 262
Query: 177 QEAMCINLSLSALGDVISALTSGQQ-FIPYRNNKLTLLMQDSIGGNAKTLMIVHVSPTEY 353
+EA INLSLSALG+VISAL G+ IPYR++KLT L+QDS+GGNAKT+M+ +V P Y
Sbjct: 263 KEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASY 322
Query: 354 NYVETINSLTYGARVKLIKNESTKSFDSEEA 446
N ET+ +L Y R K IKN+ + D ++A
Sbjct: 323 NVEETLTTLRYANRAKNIKNKPRVNEDPKDA 353
>sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 (Kinesin-like protein osm-3)
Length = 699
Score = 138 bits (348), Expect = 9e-33
Identities = 77/149 (51%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
Frame = +3
Query: 3 HVASTKMNAESSRSHLIISIMLTCHLKNSENIIRGKISIIDLAGSERVSKSGVQGVGAQE 182
HV +T MN +SSRSH I ++ + + + +I GK++++DLAGSER SK+G G +E
Sbjct: 193 HVGATLMNKDSSRSHSIFTVYVE-GMTETGSIRMGKLNLVDLAGSERQSKTGATGDRLKE 251
Query: 183 AMCINLSLSALGDVISALTSGQ-QFIPYRNNKLTLLMQDSIGGNAKTLMIVHVSPTEYNY 359
A INLSLSALG+VISAL G+ + IPYR++KLT L+QDS+GGN KT+MI VSP+ NY
Sbjct: 252 ATKINLSLSALGNVISALVDGKSKHIPYRDSKLTRLLQDSLGGNTKTIMIACVSPSSDNY 311
Query: 360 VETINSLTYGARVKLIKNESTKSFDSEEA 446
ET+++L Y R K IKN+ T + D ++A
Sbjct: 312 DETLSTLRYANRAKNIKNKPTINEDPKDA 340
>sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit (KRP-85/95 95 kDa subunit)
Length = 742
Score = 138 bits (347), Expect = 1e-32
Identities = 79/151 (52%), Positives = 104/151 (68%), Gaps = 4/151 (2%)
Frame = +3
Query: 6 VASTKMNAESSRSHLIISIMLTCHLK--NSENIIR-GKISIIDLAGSERVSKSGVQGVGA 176
V ST MN SSRSH I I + C + EN IR GK++++DLAGSER +K+G G
Sbjct: 202 VGSTNMNEHSSRSHAIFIITIECSELGVDGENHIRVGKLNLVDLAGSERQAKTGATGDRL 261
Query: 177 QEAMCINLSLSALGDVISALTSGQQ-FIPYRNNKLTLLMQDSIGGNAKTLMIVHVSPTEY 353
+EA INLSLSALG+VISAL G+ IPYR++KLT L+QDS+GGNAKT+M+ ++ P Y
Sbjct: 262 KEATKINLSLSALGNVISALVDGKSSHIPYRDSKLTRLLQDSLGGNAKTVMVANMGPASY 321
Query: 354 NYVETINSLTYGARVKLIKNESTKSFDSEEA 446
N+ ETI +L Y R K IKN+ + D ++A
Sbjct: 322 NFDETITTLRYANRAKNIKNKPKINEDPKDA 352
>sp|P33176|KINH_HUMAN Kinesin heavy chain (Ubiquitous kinesin heavy chain) (UKHC)
Length = 963
Score = 135 bits (339), Expect = 1e-31
Identities = 68/137 (49%), Positives = 94/137 (68%)
Frame = +3
Query: 3 HVASTKMNAESSRSHLIISIMLTCHLKNSENIIRGKISIIDLAGSERVSKSGVQGVGAQE 182
HVA T MN SSRSH I I + +E + GK+ ++DLAGSE+VSK+G +G E
Sbjct: 191 HVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDE 250
Query: 183 AMCINLSLSALGDVISALTSGQQFIPYRNNKLTLLMQDSIGGNAKTLMIVHVSPTEYNYV 362
A IN SLSALG+VISAL G ++PYR++K+T ++QDS+GGN +T +++ SP+ YN
Sbjct: 251 AKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNES 310
Query: 363 ETINSLTYGARVKLIKN 413
ET ++L +G R K IKN
Sbjct: 311 ETKSTLLFGQRAKTIKN 327
>sp|Q61768|KINH_MOUSE Kinesin heavy chain (Ubiquitous kinesin heavy chain) (UKHC)
Length = 963
Score = 135 bits (339), Expect = 1e-31
Identities = 68/137 (49%), Positives = 94/137 (68%)
Frame = +3
Query: 3 HVASTKMNAESSRSHLIISIMLTCHLKNSENIIRGKISIIDLAGSERVSKSGVQGVGAQE 182
HVA T MN SSRSH I I + +E + GK+ ++DLAGSE+VSK+G +G E
Sbjct: 191 HVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDE 250
Query: 183 AMCINLSLSALGDVISALTSGQQFIPYRNNKLTLLMQDSIGGNAKTLMIVHVSPTEYNYV 362
A IN SLSALG+VISAL G ++PYR++K+T ++QDS+GGN +T +++ SP+ YN
Sbjct: 251 AKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNES 310
Query: 363 ETINSLTYGARVKLIKN 413
ET ++L +G R K IKN
Sbjct: 311 ETKSTLLFGQRAKTIKN 327
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,342,066
Number of Sequences: 369166
Number of extensions: 1074432
Number of successful extensions: 2685
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2551
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)