Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_E15
(238 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80WG5|LRRC8_MOUSE Leucine-rich repeat-containing protein 8 28 6.6
sp|Q8IWT6|LRRC8_HUMAN Leucine-rich repeat-containing protein 8 28 6.6
>sp|Q80WG5|LRRC8_MOUSE Leucine-rich repeat-containing protein 8
Length = 810
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 231 LHQFVKQHYHRVLMAS*CRLVANHFAHSYSYWHSYLQHFVANL*SCF 91
LH F K + VL+ + L ++F + S L+HFV+ L CF
Sbjct: 118 LHWFAKYFPYLVLLHTLIFLACSNFWFKFPRTSSKLEHFVSILLKCF 164
>sp|Q8IWT6|LRRC8_HUMAN Leucine-rich repeat-containing protein 8
Length = 810
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 231 LHQFVKQHYHRVLMAS*CRLVANHFAHSYSYWHSYLQHFVANL*SCF 91
LH F K + VL+ + L ++F + S L+HFV+ L CF
Sbjct: 118 LHWFAKYFPYLVLLHTLIFLACSNFWFKFPRTSSKLEHFVSILLKCF 164
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,588,595
Number of Sequences: 369166
Number of extensions: 271022
Number of successful extensions: 662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 68,354,980
effective HSP length: 49
effective length of database: 59,302,965
effective search space used: 1719785985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)