Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_E06
(522 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 345 3e-95
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 345 5e-95
sp|P41937|TBB4_CAEEL Tubulin beta-4 chain (Beta-4 tubulin) 345 5e-95
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 345 5e-95
sp|P02554|TBB_PIG Tubulin beta chain 345 5e-95
sp|P61858|TBB2_DROHY Tubulin beta-2 chain (Beta-2 tubulin) ... 345 5e-95
sp|P83130|TBB2_DROER Tubulin beta-2 chain (Beta-2 tubulin) 345 5e-95
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 345 5e-95
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 345 5e-95
sp|P41386|TBB_HALDI Tubulin beta chain (Beta tubulin) 345 5e-95
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 345 bits (886), Expect = 3e-95
Identities = 168/172 (97%), Positives = 171/172 (99%)
Frame = +2
Query: 5 GSGMGTLLISKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCID 184
GSGMGTLLISKIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CID
Sbjct: 144 GSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCID 203
Query: 185 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 364
NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL
Sbjct: 204 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 263
Query: 365 HFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAA 520
HFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA
Sbjct: 264 HFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAA 315
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 345 bits (884), Expect = 5e-95
Identities = 168/172 (97%), Positives = 171/172 (99%)
Frame = +2
Query: 5 GSGMGTLLISKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCID 184
GSGMGTLLISKIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CID
Sbjct: 144 GSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCID 203
Query: 185 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 364
NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL
Sbjct: 204 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 263
Query: 365 HFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAA 520
HFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA
Sbjct: 264 HFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 315
>sp|P41937|TBB4_CAEEL Tubulin beta-4 chain (Beta-4 tubulin)
Length = 444
Score = 345 bits (884), Expect = 5e-95
Identities = 167/172 (97%), Positives = 171/172 (99%)
Frame = +2
Query: 5 GSGMGTLLISKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCID 184
GSGMGTLLISKIREEYPDR+M+TFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCID
Sbjct: 144 GSGMGTLLISKIREEYPDRIMMTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCID 203
Query: 185 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 364
NEALYDICFRTLKLTTPTYGDLNHLVS TMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL
Sbjct: 204 NEALYDICFRTLKLTTPTYGDLNHLVSMTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 263
Query: 365 HFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAA 520
HFFMPGFAPLTSRGSQQYR+LTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA
Sbjct: 264 HFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 315
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 345 bits (884), Expect = 5e-95
Identities = 168/172 (97%), Positives = 171/172 (99%)
Frame = +2
Query: 5 GSGMGTLLISKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCID 184
GSGMGTLLISKIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CID
Sbjct: 144 GSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCID 203
Query: 185 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 364
NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL
Sbjct: 204 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 263
Query: 365 HFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAA 520
HFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA
Sbjct: 264 HFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 315
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 345 bits (884), Expect = 5e-95
Identities = 168/172 (97%), Positives = 171/172 (99%)
Frame = +2
Query: 5 GSGMGTLLISKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCID 184
GSGMGTLLISKIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CID
Sbjct: 144 GSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCID 203
Query: 185 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 364
NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL
Sbjct: 204 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 263
Query: 365 HFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAA 520
HFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA
Sbjct: 264 HFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 315
>sp|P61858|TBB2_DROHY Tubulin beta-2 chain (Beta-2 tubulin)
sp|P61857|TBB2_DROME Tubulin beta-2 chain (Beta-2 tubulin)
Length = 446
Score = 345 bits (884), Expect = 5e-95
Identities = 168/172 (97%), Positives = 171/172 (99%)
Frame = +2
Query: 5 GSGMGTLLISKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCID 184
GSGMGTLLISKIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CID
Sbjct: 144 GSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCID 203
Query: 185 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 364
NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL
Sbjct: 204 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 263
Query: 365 HFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAA 520
HFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA
Sbjct: 264 HFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 315
>sp|P83130|TBB2_DROER Tubulin beta-2 chain (Beta-2 tubulin)
Length = 446
Score = 345 bits (884), Expect = 5e-95
Identities = 168/172 (97%), Positives = 171/172 (99%)
Frame = +2
Query: 5 GSGMGTLLISKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCID 184
GSGMGTLLISKIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CID
Sbjct: 144 GSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCID 203
Query: 185 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 364
NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL
Sbjct: 204 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 263
Query: 365 HFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAA 520
HFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA
Sbjct: 264 HFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 315
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 345 bits (884), Expect = 5e-95
Identities = 168/172 (97%), Positives = 171/172 (99%)
Frame = +2
Query: 5 GSGMGTLLISKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCID 184
GSGMGTLLISKIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CID
Sbjct: 144 GSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCID 203
Query: 185 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 364
NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL
Sbjct: 204 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 263
Query: 365 HFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAA 520
HFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA
Sbjct: 264 HFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 315
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 345 bits (884), Expect = 5e-95
Identities = 168/172 (97%), Positives = 171/172 (99%)
Frame = +2
Query: 5 GSGMGTLLISKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCID 184
GSGMGTLLISKIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CID
Sbjct: 144 GSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCID 203
Query: 185 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 364
NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL
Sbjct: 204 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 263
Query: 365 HFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAA 520
HFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA
Sbjct: 264 HFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 315
>sp|P41386|TBB_HALDI Tubulin beta chain (Beta tubulin)
Length = 341
Score = 345 bits (884), Expect = 5e-95
Identities = 168/172 (97%), Positives = 171/172 (99%)
Frame = +2
Query: 5 GSGMGTLLISKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCID 184
GSGMGTLLISKIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CID
Sbjct: 70 GSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCID 129
Query: 185 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 364
NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL
Sbjct: 130 NEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 189
Query: 365 HFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAA 520
HFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA
Sbjct: 190 HFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 241
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,942,477
Number of Sequences: 369166
Number of extensions: 1104558
Number of successful extensions: 3044
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2983
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)