Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_E04
(679 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UJ70|NAGK_HUMAN N-acetylglucosamine kinase (GlcNAc kin... 125 1e-28
sp|Q9QZ08|NAGK_MOUSE N-acetylglucosamine kinase (GlcNAc kin... 122 1e-27
sp|P20261|LIP1_CANRU Lipase 1 precursor 30 4.4
sp|Q6MUM4|KSGA_MYCMS Dimethyladenosine transferase (S-adeno... 30 5.8
sp|Q970U8|CARA_SULTO Carbamoyl-phosphate synthase small cha... 30 5.8
sp|P03037|RANT_BPP22 Antirepressor protein ant 29 9.9
sp|Q59968|CARA_SULSO Carbamoyl-phosphate synthase small cha... 29 9.9
sp|O74420|WTF13_SCHPO Hypothetical protein wtf13 29 9.9
>sp|Q9UJ70|NAGK_HUMAN N-acetylglucosamine kinase (GlcNAc kinase)
Length = 344
Score = 125 bits (314), Expect = 1e-28
Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 3/213 (1%)
Frame = +1
Query: 1 GSNCRLVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIKKIIDAEEGRIPMETPYSVFKEI 180
GSNCRL++ D + GGWG+++GDEGSAY I + +K + D+ + K+
Sbjct: 128 GSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQA 187
Query: 181 LFKYLKISDIYELIPLYYHNFDKALIANMCPLLAQAAENGDKFCIDLFYEAGYILARLVA 360
+F Y ++ D ++ Y +FDK A C +A+ A+ GD +F +AG +L R +
Sbjct: 188 MFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIV 247
Query: 361 TMARHCEPAILENPEGLPVVCVGGVWGSWNLLESGFIDGLKPKYE---NDIVIKKICLKR 531
+ +P + + GLP++CVG VW SW LL+ GF+ L E + +K
Sbjct: 248 AVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKL 307
Query: 532 LIVTAAYGAAIIASELGHSPIKPDYSSTFCVFF 630
+A GA++ A +GH + DYS+ F+
Sbjct: 308 RHSSALGGASLGARHIGHL-LPMDYSANAIAFY 339
>sp|Q9QZ08|NAGK_MOUSE N-acetylglucosamine kinase (GlcNAc kinase)
Length = 343
Score = 122 bits (305), Expect = 1e-27
Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 4/214 (1%)
Frame = +1
Query: 1 GSNCRLVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIKKIIDAEEGRIPMETPYSVFKEI 180
GSNCRL++ D + GGWG+++GDEGSAY I + +K + D+ + K+
Sbjct: 128 GSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGHVKQA 187
Query: 181 LFKYLKISDIYELIPLYYHNFDKALIANMCPLLAQAAENGDKFCIDLFYEAGYILARLVA 360
+F Y ++ D ++ Y +FDK A C +A+ A GD +F +AG +L R V
Sbjct: 188 MFDYFQVPDRLGILTHLYRDFDKCKFAGFCQKIAEGAHQGDPLSRYIFRKAGEMLGRHVV 247
Query: 361 TMARHCEPAILENPEGLPVVCVGGVWGSWNLLESGFIDGLKPKYENDI--VIKKICLKRL 534
+ +P + + GLP++CVG VW SW LL+ GF+ L E L +L
Sbjct: 248 AVLPEIDPVLFQGELGLPILCVGSVWKSWELLKEGFLLALTLGREQQAQNSFSSFTLMKL 307
Query: 535 IVTAAYGAAII-ASELG-HSPIKPDYSSTFCVFF 630
++A G A + A +G H P+ DYS F+
Sbjct: 308 RHSSALGGASLGARHIGYHLPM--DYSINAIAFY 339
>sp|P20261|LIP1_CANRU Lipase 1 precursor
Length = 549
Score = 30.4 bits (67), Expect = 4.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 16 LVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIK 114
++H + + RV WG L GDE A G N G+K
Sbjct: 164 IIHVSVNY-RVSSWGFLAGDEIKAEGSANAGLK 195
>sp|Q6MUM4|KSGA_MYCMS Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
Length = 266
Score = 30.0 bits (66), Expect = 5.8
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 124 DAEEGRIPMETPYSVFKEILFKYLKISDI 210
D E+ I TPY + EILFK L+ISD+
Sbjct: 96 DYEKISIISNTPYYITSEILFKTLQISDL 124
>sp|Q970U8|CARA_SULTO Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate
synthetase glutamine chain)
Length = 372
Score = 30.0 bits (66), Expect = 5.8
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 418 VCVGGVWGSWNLLESGFIDGLKPKYENDIVIKKICLKRLIVTAAYGAAIIASELGHSPI- 594
V G G+ NLL+ I+ K E I I ICL + T A G + + GH I
Sbjct: 229 VVFGNGPGNPNLLQE-VIENFKELTEYKIPILGICLGHQVATLAMGGKVNKMKFGHRAIN 287
Query: 595 KP--DYSSTFC 621
KP D SS C
Sbjct: 288 KPVIDISSNKC 298
>sp|P03037|RANT_BPP22 Antirepressor protein ant
Length = 300
Score = 29.3 bits (64), Expect = 9.9
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = +1
Query: 232 YHNFDKALIANMCPLLAQAAENGDKFCIDLFYEAGYILARLVATMARHCEPAILENPEG 408
Y N +AL + P + Q N C D +E YI+ + H + P+G
Sbjct: 220 YANRSQALFRELYPAMRQIQSNYSGKCYDYGHEFSYIIGIARDVLINHTRDVDINEPDG 278
>sp|Q59968|CARA_SULSO Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate
synthetase glutamine chain)
Length = 367
Score = 29.3 bits (64), Expect = 9.9
Identities = 42/169 (24%), Positives = 69/169 (40%)
Frame = +1
Query: 88 YGIVNGGIKKIIDAEEGRIPMETPYSVFKEILFKYLKISDIYELIPLYYHNFDKALIANM 267
YG + G I ++ ++ R +E Y F K P+++ N ++
Sbjct: 135 YGTMMGIIASELEIDDPRKYLEKKYDEIDFTQFTSPKS-------PIFHPNTGDMIVVVD 187
Query: 268 CPLLAQAAENGDKFCIDLFYEAGYILARLVATMARHCEPAILENPEGLPVVCVGGVWGSW 447
C + ++G + + Y+ G+ + R+ + + I NP+G +V G G+
Sbjct: 188 CGI-----KHGILYGL---YKRGFSIVRVPCSFS--ASKIIEYNPKG--IVFSNGP-GNP 234
Query: 448 NLLESGFIDGLKPKYENDIVIKKICLKRLIVTAAYGAAIIASELGHSPI 594
NLLE+ I E I I ICL I T A G I + GH I
Sbjct: 235 NLLENQ-IKTFSELVEYKIPILGICLGHQIATLALGGKIKKMKFGHRAI 282
>sp|O74420|WTF13_SCHPO Hypothetical protein wtf13
Length = 418
Score = 29.3 bits (64), Expect = 9.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 4 SNCRLVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIKKIIDAEEG 138
+NC D R+GG GN G G+A+G + I +I +A G
Sbjct: 359 TNCM---NDFLLTRLGGLGNAFGGIGNAFGGIGNAIGRIGNAFRG 400
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,115,065
Number of Sequences: 369166
Number of extensions: 1597746
Number of successful extensions: 4025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4024
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5733423530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)