Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_D16
(321 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02508|HGV2_HALRO Protein HGV2 49 5e-06
sp|P06180|HIBN_XENLA Histone-binding protein N1/N2 47 2e-05
sp|Q9UDT6|CYLN2_HUMAN Cytoplasmic linker protein 2 (Cytopla... 31 0.77
sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-ace... 31 0.77
sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acety... 31 0.77
sp|Q9Z0H8|CYLN2_MOUSE Cytoplasmic linker protein 2 (Cytopla... 31 1.0
sp|O55156|CYLN2_RAT Cytoplasmic linker protein 2 (Cytoplasm... 31 1.0
sp|Q5RAC9|APG16_PONPY Autophagy protein 16-like (APG16-like) 28 5.0
sp|Q676U5|APG16_HUMAN Autophagy protein 16-like (APG16-like) 28 5.0
sp|P30622|REST_HUMAN Restin (Cytoplasmic linker protein 170... 28 6.5
>sp|Q02508|HGV2_HALRO Protein HGV2
Length = 510
Score = 48.5 bits (114), Expect = 5e-06
Identities = 27/94 (28%), Positives = 53/94 (56%)
Frame = +3
Query: 3 LTYLQLAYETIECAKLVLNNQLNEKVGVESDLELKMADCCDLVGNIYLEEDVIPEAIDQY 182
++ +QLA+E +E AK++ K + +A C +G + LE + P+AI +
Sbjct: 229 ISNMQLAWEMLELAKVLYKKHDKSKTNKQM-----VAQCHLKLGELGLEVENHPQAIGDF 283
Query: 183 KKALMLRQKHLDKLSRTIAESYYNLRVAFTVDMR 284
+ L++++ L + R +AE+YYNL +A++ + R
Sbjct: 284 LECLVIQKDLLPETDRKLAETYYNLGLAYSFEKR 317
>sp|P06180|HIBN_XENLA Histone-binding protein N1/N2
Length = 590
Score = 46.6 bits (109), Expect = 2e-05
Identities = 22/86 (25%), Positives = 50/86 (58%)
Frame = +3
Query: 12 LQLAYETIECAKLVLNNQLNEKVGVESDLELKMADCCDLVGNIYLEEDVIPEAIDQYKKA 191
LQLA+E ++ K + Q +++ +LK A +G + +E + +A++ +
Sbjct: 330 LQLAWEMLDLCKTIFKRQQSKEA------QLKAAQAHQKLGEVCIESENYSQAVEDFLAC 383
Query: 192 LMLRQKHLDKLSRTIAESYYNLRVAF 269
L ++++HL++ R +AE++Y+L +A+
Sbjct: 384 LNIQKEHLEEHDRLLAETHYHLGLAY 409
>sp|Q9UDT6|CYLN2_HUMAN Cytoplasmic linker protein 2 (Cytoplasmic linker protein 115)
(CLIP-115) (Williams-Beuren syndrome chromosome region 4
protein)
Length = 1046
Score = 31.2 bits (69), Expect = 0.77
Identities = 17/77 (22%), Positives = 42/77 (54%)
Frame = +3
Query: 15 QLAYETIECAKLVLNNQLNEKVGVESDLELKMADCCDLVGNIYLEEDVIPEAIDQYKKAL 194
+L E++ K+ L+NQL E+ DL+ ++ + G++ + + I + +++L
Sbjct: 418 RLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSL 477
Query: 195 MLRQKHLDKLSRTIAES 245
+L + ++L R +A++
Sbjct: 478 LLEKAQAERLLRELADN 494
>sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110 kDa subunit (O-GlcNAc transferase p110 subunit)
Length = 1046
Score = 31.2 bits (69), Expect = 0.77
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 108 MADCCDLVGNIYLEEDVIPEAIDQYKKALMLRQKHLDKLSRTIAESYYNLRVAFTV--DM 281
+A+ +GN+Y E + EAI+ Y+ AL L+ +D Y NL A DM
Sbjct: 88 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID--------GYINLAAALVAAGDM 139
Query: 282 RPARLSKLTNMQ 317
A + ++ +Q
Sbjct: 140 EGAVQAYVSALQ 151
>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110 kDa subunit (O-GlcNAc transferase p110 subunit)
Length = 1036
Score = 31.2 bits (69), Expect = 0.77
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 108 MADCCDLVGNIYLEEDVIPEAIDQYKKALMLRQKHLDKLSRTIAESYYNLRVAFTV--DM 281
+A+ +GN+Y E + EAI+ Y+ AL L+ +D Y NL A DM
Sbjct: 78 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID--------GYINLAAALVAAGDM 129
Query: 282 RPARLSKLTNMQ 317
A + ++ +Q
Sbjct: 130 EGAVQAYVSALQ 141
>sp|Q9Z0H8|CYLN2_MOUSE Cytoplasmic linker protein 2 (Cytoplasmic linker protein 115)
(CLIP-115)
Length = 1047
Score = 30.8 bits (68), Expect = 1.0
Identities = 17/77 (22%), Positives = 41/77 (53%)
Frame = +3
Query: 15 QLAYETIECAKLVLNNQLNEKVGVESDLELKMADCCDLVGNIYLEEDVIPEAIDQYKKAL 194
+L E + K+ L+NQL E+ DL+ ++ + G++ + + I + +++L
Sbjct: 419 RLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSL 478
Query: 195 MLRQKHLDKLSRTIAES 245
+L + ++L R +A++
Sbjct: 479 LLEKAQAERLLRELADN 495
>sp|O55156|CYLN2_RAT Cytoplasmic linker protein 2 (Cytoplasmic linker protein 115)
(CLIP-115)
Length = 1046
Score = 30.8 bits (68), Expect = 1.0
Identities = 17/77 (22%), Positives = 41/77 (53%)
Frame = +3
Query: 15 QLAYETIECAKLVLNNQLNEKVGVESDLELKMADCCDLVGNIYLEEDVIPEAIDQYKKAL 194
+L E + K+ L+NQL E+ DL+ ++ + G++ + + I + +++L
Sbjct: 419 RLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSL 478
Query: 195 MLRQKHLDKLSRTIAES 245
+L + ++L R +A++
Sbjct: 479 LLEKAQAERLLRELADN 495
>sp|Q5RAC9|APG16_PONPY Autophagy protein 16-like (APG16-like)
Length = 607
Score = 28.5 bits (62), Expect = 5.0
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +3
Query: 36 ECAKLV--LNNQLNEKVGVESDLELKMADCCDLVGNIYLEEDVIPEAIDQYKKALMLRQK 209
E A+LV LNNQ+ K E K+A+C + D+ E +D L +
Sbjct: 105 ELAQLVIDLNNQMQRKDREMQMNEAKIAECLQTI------SDLETECLD-----LRTKLC 153
Query: 210 HLDKLSRTIAESYYNLRVAFT 272
L++ ++T+ + Y L++ FT
Sbjct: 154 DLERANQTLKDEYDALQITFT 174
>sp|Q676U5|APG16_HUMAN Autophagy protein 16-like (APG16-like)
Length = 607
Score = 28.5 bits (62), Expect = 5.0
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +3
Query: 36 ECAKLV--LNNQLNEKVGVESDLELKMADCCDLVGNIYLEEDVIPEAIDQYKKALMLRQK 209
E A+LV LNNQ+ K E K+A+C + D+ E +D L +
Sbjct: 105 ELAQLVIDLNNQMQRKDREMQMNEAKIAECLQTI------SDLETECLD-----LRTKLC 153
Query: 210 HLDKLSRTIAESYYNLRVAFT 272
L++ ++T+ + Y L++ FT
Sbjct: 154 DLERANQTLKDEYDALQITFT 174
>sp|P30622|REST_HUMAN Restin (Cytoplasmic linker protein 170 alpha-2) (CLIP-170)
(Reed-Sternberg intermediate filament associated
protein) (Cytoplasmic linker protein 1)
Length = 1427
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/78 (21%), Positives = 38/78 (48%)
Frame = +3
Query: 12 LQLAYETIECAKLVLNNQLNEKVGVESDLELKMADCCDLVGNIYLEEDVIPEAIDQYKKA 191
L+ E + K+ L NQL E+ DL+ ++ + G++ + + I + +++
Sbjct: 413 LRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLETQTKLEHARIKELEQS 472
Query: 192 LMLRQKHLDKLSRTIAES 245
L+ + DKL R + ++
Sbjct: 473 LLFEKTKADKLQRELEDT 490
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,392,730
Number of Sequences: 369166
Number of extensions: 596965
Number of successful extensions: 1798
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1798
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)