Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_D04
(820 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03168|ASPP_AEDAE Lysosomal aspartic protease precursor 329 5e-90
sp|Q05744|CATD_CHICK Cathepsin D precursor [Contains: Cathe... 315 1e-85
sp|P18242|CATD_MOUSE Cathepsin D precursor 297 3e-80
sp|P24268|CATD_RAT Cathepsin D precursor [Contains: Catheps... 296 5e-80
sp|P80209|CATD_BOVIN Cathepsin D precursor 296 5e-80
sp|P07339|CATD_HUMAN Cathepsin D precursor [Contains: Cathe... 295 1e-79
sp|Q9MZS8|CATD_SHEEP Cathepsin D precursor 291 1e-78
sp|Q9DEX3|CATD_CLUHA Cathepsin D precursor 291 1e-78
sp|P00795|CATD_PIG Cathepsin D [Contains: Cathepsin D light... 286 6e-77
sp|Q805F2|CATEB_XENLA Cathepsin E-B precursor 261 2e-69
>sp|Q03168|ASPP_AEDAE Lysosomal aspartic protease precursor
Length = 387
Score = 329 bits (844), Expect = 5e-90
Identities = 163/275 (59%), Positives = 198/275 (72%), Gaps = 5/275 (1%)
Frame = +2
Query: 2 TPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSIRYGTGS 181
TPPQ F V+FDTGSSNLWVPSK+C TNIACL H KY++ KSST+ KNGT F I+YG+GS
Sbjct: 76 TPPQSFKVVFDTGSSNLWVPSKECSFTNIACLMHNKYNAKKSSTFEKNGTAFHIQYGSGS 135
Query: 182 LSGFLSTDTVTIAGANVVNQTFGEAISEPGMTFVAAKFDGILGMAYPSISVDQVTPVFQN 361
LSG+LSTDTV + G +V QTF EAI+EPG+ FVAAKFDGILG+ Y SISVD V PVF N
Sbjct: 136 LSGYLSTDTVGLGGVSVTKQTFAEAINEPGLVFVAAKFDGILGLGYSSISVDGVVPVFYN 195
Query: 362 MVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPVTSKTYWQFKMDGL 541
M Q L+DAP+FSFYLNRD + GGEI+FGGSD+N Y G FTY V K YWQFKMD +
Sbjct: 196 MFNQGLIDAPVFSFYLNRDPSAAEGGEIIFGGSDSNKYTGDFTYLSVDRKAYWQFKMDSV 255
Query: 542 SMLGKTYCTE-CIAIADTGTSLIVGPESVIDDINSKFNGTKI-NGMTIVLCSNVAKLPVV 715
+ +C C AIADTGTSLI GP S + IN GT I NG +V CS + KLP +
Sbjct: 256 KVGDTEFCNNGCEAIADTGTSLIAGPVSEVTAINKAIGGTPIMNGEYMVDCSLIPKLPKI 315
Query: 716 NIQIGGRNFPLNSTDYIMKVQD---TVCISGFTSL 811
+ +GG++F L DY+++V T+C+SGF +
Sbjct: 316 SFVLGGKSFDLEGADYVLRVAQMGKTICLSGFMGI 350
>sp|Q05744|CATD_CHICK Cathepsin D precursor [Contains: Cathepsin D light chain; Cathepsin
D heavy chain]
Length = 398
Score = 315 bits (806), Expect = 1e-85
Identities = 153/277 (55%), Positives = 198/277 (71%), Gaps = 7/277 (2%)
Frame = +2
Query: 2 TPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSIRYGTGS 181
TPPQ FTV+FDTGSSNLWVPS C + +IACL H KYD+SKSSTYV+NGT+F+I YGTGS
Sbjct: 86 TPPQKFTVVFDTGSSNLWVPSVHCHLLDIACLLHHKYDASKSSTYVENGTEFAIHYGTGS 145
Query: 182 LSGFLSTDTVTIAGANVVNQTFGEAISEPGMTFVAAKFDGILGMAYPSISVDQVTPVFQN 361
LSGFLS DTVT+ + NQ FGEA+ +PG+TF+AAKFDGILGMA+P ISVD+VTP F N
Sbjct: 146 LSGFLSQDTVTLGNLKIKNQIFGEAVKQPGITFIAAKFDGILGMAFPRISVDKVTPFFDN 205
Query: 362 MVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPVTSKTYWQFKMDGL 541
++ QKL++ IFSFYLNRD +PGGE+L GG+D +Y+G F++ VT K YWQ MD +
Sbjct: 206 VMQQKLIEKNIFSFYLNRDPTAQPGGELLLGGTDPKYYSGDFSWVNVTRKAYWQVHMDSV 265
Query: 542 SML-GKTYCT-ECIAIADTGTSLIVGPESVIDDINSKFNGTK--INGMTIVLCSNVAKLP 709
+ G T C C AI DTGTSLI GP + ++ + G K I G ++ C ++ LP
Sbjct: 266 DVANGLTLCKGGCEAIVDTGTSLITGPTKEVKELQTAI-GAKPLIKGQYVISCDKISSLP 324
Query: 710 VVNIQIGGRNFPLNSTDYIMKVQ---DTVCISGFTSL 811
VV + +GG+ + L Y+ KV +T+C+SGF+ L
Sbjct: 325 VVTLMLGGKPYQLTGEQYVFKVSAQGETICLSGFSGL 361
>sp|P18242|CATD_MOUSE Cathepsin D precursor
Length = 410
Score = 297 bits (760), Expect = 3e-80
Identities = 152/285 (53%), Positives = 191/285 (67%), Gaps = 15/285 (5%)
Frame = +2
Query: 2 TPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSIRYGTGS 181
TPPQ FTV+FDTGSSNLWVPS CKI +IAC H KY+S KSSTYVKNGT F I YG+GS
Sbjct: 87 TPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGS 146
Query: 182 LSGFLSTDTVTIA---------GANVVNQTFGEAISEPGMTFVAAKFDGILGMAYPSISV 334
LSG+LS DTV++ G V Q FGEA +PG+ FVAAKFDGILGM YP ISV
Sbjct: 147 LSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAKFDGILGMGYPHISV 206
Query: 335 DQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPVTSKT 514
+ V PVF N++ QKLVD IFSFYLNRD G+PGGE++ GG+D+ +Y+G +Y VT K
Sbjct: 207 NNVLPVFDNLMQQKLVDKNIFSFYLNRDPEGQPGGELMLGGTDSKYYHGELSYLNVTRKA 266
Query: 515 YWQFKMDGLSMLGK-TYCT-ECIAIADTGTSLIVGPESVIDDINSKFNGTK-INGMTIVL 685
YWQ MD L + + T C C AI DTGTSL+VGP + ++ I G ++
Sbjct: 267 YWQVHMDQLEVGNELTLCKGGCEAIVDTGTSLLVGPVEEVKELQKAIGAVPLIQGEYMIP 326
Query: 686 CSNVAKLPVVNIQIGGRNFPLNSTDYIMKVQD---TVCISGFTSL 811
C V+ LP V +++GG+N+ L+ YI+KV T+C+SGF +
Sbjct: 327 CEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGM 371
>sp|P24268|CATD_RAT Cathepsin D precursor [Contains: Cathepsin D 12 kDa light chain;
Cathepsin D 9 kDa light chain; Cathepsin D 34 kDa heavy
chain; Cathepsin D 30 kDa heavy chain]
Length = 407
Score = 296 bits (758), Expect = 5e-80
Identities = 148/282 (52%), Positives = 192/282 (68%), Gaps = 12/282 (4%)
Frame = +2
Query: 2 TPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSIRYGTGS 181
TPPQ FTV+FDTGSSNLWVPS CK+ +IAC H KY+S KSSTYVKNGT F I YG+GS
Sbjct: 87 TPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGS 146
Query: 182 LSGFLSTDTVTI------AGANVVNQTFGEAISEPGMTFVAAKFDGILGMAYPSISVDQV 343
LSG+LS DTV++ G V Q FGEA +PG+ F+AAKFDGILGM YP ISV++V
Sbjct: 147 LSGYLSQDTVSVPCKSDLGGIKVEKQIFGEATKQPGVVFIAAKFDGILGMGYPFISVNKV 206
Query: 344 TPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPVTSKTYWQ 523
PVF N++ QKLV+ IFSFYLNRD G+PGGE++ GG+D+ +Y+G +Y VT K YWQ
Sbjct: 207 LPVFDNLMKQKLVEKNIFSFYLNRDPTGQPGGELMLGGTDSRYYHGELSYLNVTRKAYWQ 266
Query: 524 FKMDGLSMLGK-TYCT-ECIAIADTGTSLIVGPESVIDDINSKFNGTK-INGMTIVLCSN 694
MD L + + T C C AI DTGTSL+VGP + ++ I G ++ C
Sbjct: 267 VHMDQLEVGSELTLCKGGCEAIVDTGTSLLVGPVDEVKELQKAIGAVPLIQGEYMIPCEK 326
Query: 695 VAKLPVVNIQIGGRNFPLNSTDYIMKVQD---TVCISGFTSL 811
V+ LP++ ++GG+N+ L+ YI+KV T+C+SGF +
Sbjct: 327 VSSLPIITFKLGGQNYELHPEKYILKVSQAGKTICLSGFMGM 368
>sp|P80209|CATD_BOVIN Cathepsin D precursor
Length = 390
Score = 296 bits (758), Expect = 5e-80
Identities = 150/285 (52%), Positives = 193/285 (67%), Gaps = 15/285 (5%)
Frame = +2
Query: 2 TPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSIRYGTGS 181
TPPQ FTV+FDTGS+NLWVPS CK+ +IAC THRKY+S KSSTYVKNGT F I YG+GS
Sbjct: 67 TPPQCFTVVFDTGSANLWVPSIHCKLLDIACWTHRKYNSDKSSTYVKNGTTFDIHYGSGS 126
Query: 182 LSGFLSTDTVTI---------AGANVVNQTFGEAISEPGMTFVAAKFDGILGMAYPSISV 334
LSG+LS DTV++ G V QTFGEAI +PG+ F+AAKFDGILGMAYP ISV
Sbjct: 127 LSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMAYPRISV 186
Query: 335 DQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPVTSKT 514
+ V PVF N++ QKLVD +FSF+LNRD +PGGE++ GG+D+ +Y G + VT +
Sbjct: 187 NNVLPVFDNLMQQKLVDKNVFSFFLNRDPKAQPGGELMLGGTDSKYYRGSLMFHNVTRQA 246
Query: 515 YWQFKMDGLSM-LGKTYCT-ECIAIADTGTSLIVGPESVIDDINSKFNGTK-INGMTIVL 685
YWQ MD L + T C C AI DTGTSLIVGP + ++ I G ++
Sbjct: 247 YWQIHMDQLDVGSSLTVCKGGCEAIVDTGTSLIVGPVEEVRELQKAIGAVPLIQGEYMIP 306
Query: 686 CSNVAKLPVVNIQIGGRNFPLNSTDYIMKV---QDTVCISGFTSL 811
C V+ LP V +++GG+++ L+ DY +KV + TVC+SGF +
Sbjct: 307 CEKVSSLPEVTVKLGGKDYALSPEDYALKVSQAETTVCLSGFMGM 351
>sp|P07339|CATD_HUMAN Cathepsin D precursor [Contains: Cathepsin D light chain; Cathepsin
D heavy chain]
Length = 412
Score = 295 bits (754), Expect = 1e-79
Identities = 148/287 (51%), Positives = 192/287 (66%), Gaps = 17/287 (5%)
Frame = +2
Query: 2 TPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSIRYGTGS 181
TPPQ FTV+FDTGSSNLWVPS CK+ +IAC H KY+S KSSTYVKNGT F I YG+GS
Sbjct: 87 TPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGS 146
Query: 182 LSGFLSTDTVTI-----------AGANVVNQTFGEAISEPGMTFVAAKFDGILGMAYPSI 328
LSG+LS DTV++ G V Q FGEA +PG+TF+AAKFDGILGMAYP I
Sbjct: 147 LSGYLSQDTVSVPCQSASSASALGGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRI 206
Query: 329 SVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPVTS 508
SV+ V PVF N++ QKLVD IFSFYL+RD + +PGGE++ GG+D+ +Y G +Y VT
Sbjct: 207 SVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTR 266
Query: 509 KTYWQFKMDGLSML-GKTYCTE-CIAIADTGTSLIVGPESVIDDINSKFNGTK-INGMTI 679
K YWQ +D + + G T C E C AI DTGTSL+VGP + ++ I G +
Sbjct: 267 KAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYM 326
Query: 680 VLCSNVAKLPVVNIQIGGRNFPLNSTDYIMKVQD---TVCISGFTSL 811
+ C V+ LP + +++GG+ + L+ DY +KV T+C+SGF +
Sbjct: 327 IPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGM 373
>sp|Q9MZS8|CATD_SHEEP Cathepsin D precursor
Length = 365
Score = 291 bits (746), Expect = 1e-78
Identities = 148/285 (51%), Positives = 191/285 (67%), Gaps = 15/285 (5%)
Frame = +2
Query: 2 TPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSIRYGTGS 181
TPPQ FTV+FDTGS+NLWVPS CK+ +IAC H KY+S KSSTYVKNGT F I YG+GS
Sbjct: 62 TPPQCFTVVFDTGSANLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTTFDIHYGSGS 121
Query: 182 LSGFLSTDTVTI---------AGANVVNQTFGEAISEPGMTFVAAKFDGILGMAYPSISV 334
LSG+LS DTV++ G V QTFGEAI +PG+ F+AAKFDGILGMAYP ISV
Sbjct: 122 LSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMAYPRISV 181
Query: 335 DQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPVTSKT 514
+ V PVF N++ QKLVD +FSF+LNRD +PG E++ GG+D+ +Y G TY VT +
Sbjct: 182 NNVLPVFDNLMRQKLVDKNVFSFFLNRDPKAQPGEELMLGGTDSKYYRGSLTYHNVTRQA 241
Query: 515 YWQFKMDGLSM-LGKTYCT-ECIAIADTGTSLIVGPESVIDDINSKFNGTK-INGMTIVL 685
YWQ MD L + T C C AI DTGTSL+VGP + +++ I G ++
Sbjct: 242 YWQIHMDQLDVGSSLTVCKGGCEAIVDTGTSLMVGPVDEVRELHKAIGAVPLIQGEYMIP 301
Query: 686 CSNVAKLPVVNIQIGGRNFPLNSTDYIMKVQD---TVCISGFTSL 811
C V+ LP V +++GG+++ L+ DY +KV TVC+SGF +
Sbjct: 302 CEKVSSLPQVTLKLGGKDYTLSPEDYTLKVSQAGTTVCLSGFMGM 346
>sp|Q9DEX3|CATD_CLUHA Cathepsin D precursor
Length = 396
Score = 291 bits (745), Expect = 1e-78
Identities = 144/276 (52%), Positives = 188/276 (68%), Gaps = 6/276 (2%)
Frame = +2
Query: 2 TPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSIRYGTGS 181
TP Q+FTV+FDTGSSNLW+PS C T+IACL H KY+ +KSSTYVKNGT+F+I+YG+GS
Sbjct: 84 TPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNGAKSSTYVKNGTEFAIQYGSGS 143
Query: 182 LSGFLSTDTVTIAGANVVNQTFGEAISEPGMTFVAAKFDGILGMAYPSISVDQVTPVFQN 361
LSG+LS D+ TI V Q FGEAI +PG+ F+AAKFDGILGMAYP ISVD V PVF
Sbjct: 144 LSGYLSQDSCTIGDIVVEKQLFGEAIKQPGVAFIAAKFDGILGMAYPRISVDGVPPVFDM 203
Query: 362 MVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPVTSKTYWQFKMDGL 541
M++QK V+ +FSFYLNR+ + +PGGE+L GG+D +Y G F Y PVT + YWQ MDG+
Sbjct: 204 MMSQKKVEQNVFSFYLNRNPDTEPGGELLLGGTDPKYYTGDFNYVPVTRQAYWQIHMDGM 263
Query: 542 SMLGK-TYCTE-CIAIADTGTSLIVGPESVIDDINSKFNGTK-INGMTIVLCSNVAKLPV 712
S+ + T C + C AI DTGTSLI GP + + + I G ++ C V LP
Sbjct: 264 SIGSQLTLCKDGCEAIVDTGTSLITGPPAEVRALQKAIGAIPLIQGEYMIDCKKVPTLPT 323
Query: 713 VNIQIGGRNFPLNSTDYIMKVQD---TVCISGFTSL 811
++ +GG+ + L Y++K T+C+SG L
Sbjct: 324 ISFNVGGKTYSLTGEQYVLKESQGGKTICLSGLMGL 359
>sp|P00795|CATD_PIG Cathepsin D [Contains: Cathepsin D light chain; Cathepsin D heavy
chain]
Length = 345
Score = 286 bits (731), Expect = 6e-77
Identities = 149/286 (52%), Positives = 189/286 (66%), Gaps = 16/286 (5%)
Frame = +2
Query: 2 TPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSIRYGTGS 181
TPPQ FTV+FDTGSSNLWVPS CK+ +IAC H KY+S KSSTYVKNGT F+I YG+GS
Sbjct: 23 TPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSGKSSTYVKNGTTFAIHYGSGS 82
Query: 182 LSGFLST-DTVTI---------AGANVVNQTFGEAISEPGMTFVAAKFDGILGMAYPSIS 331
LSG+LS+ DTV++ G V QTFGEA +PG+TF+AAKFDGILGMAYP IS
Sbjct: 83 LSGYLSSQDTVSVPCNSALSGVGGIKVERQTFGEATKQPGLTFIAAKFDGILGMAYPRIS 142
Query: 332 VDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPVTSK 511
V+ V PVF N++ QKLVD IFSFYLNRD +PGGE++ GG D+ +Y G Y VT K
Sbjct: 143 VNNVVPVFDNLMQQKLVDKDIFSFYLNRDPGAQPGGELMLGGIDSKYYKGSLDYHNVTRK 202
Query: 512 TYWQFKMDGLSM-LGKTYCT-ECIAIADTGTSLIVGPESVIDDINSKFNGTK-INGMTIV 682
YWQ M+ +++ T C C AI DTGTSLIVG + ++ I G ++
Sbjct: 203 AYWQIHMNQVAVGSSLTLCKGGCEAIVDTGTSLIVGQPEEVRELGKAIGAVPLIQGEYMI 262
Query: 683 LCSNVAKLPVVNIQIGGRNFPLNSTDYIMKVQ---DTVCISGFTSL 811
C V LP V + +GG+ + L+S +Y +KV T+C+SGF +
Sbjct: 263 PCEKVPSLPDVTVTLGGKKYKLSSENYTLKVSQAGQTICLSGFMGM 308
>sp|Q805F2|CATEB_XENLA Cathepsin E-B precursor
Length = 397
Score = 261 bits (667), Expect = 2e-69
Identities = 131/272 (48%), Positives = 176/272 (64%), Gaps = 2/272 (0%)
Frame = +2
Query: 2 TPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSIRYGTGS 181
TPPQ FTV+FDTGSSNLWVPS C + AC H ++ SSTY NG +FS++YGTGS
Sbjct: 82 TPPQNFTVIFDTGSSNLWVPSVYC--ISPACAQHNRFQPQLSSTYESNGNNFSLQYGTGS 139
Query: 182 LSGFLSTDTVTIAGANVVNQTFGEAISEPGMTFVAAKFDGILGMAYPSISVDQVTPVFQN 361
LSG + D+VT+ G V NQ FGE++SEPG TFV A FDGILG+ YPSI+V TPVF N
Sbjct: 140 LSGVIGIDSVTVEGILVQNQQFGESVSEPGSTFVDASFDGILGLGYPSIAVGGCTPVFDN 199
Query: 362 MVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPVTSKTYWQFKMDGL 541
M+ Q LV+ P+FS Y++RD N GGE++FGG D + ++G + PVT++ YWQ ++D +
Sbjct: 200 MIAQNLVELPMFSVYMSRDPNSPVGGELVFGGFDASRFSGQLNWVPVTNQGYWQIQLDNI 259
Query: 542 SMLGK-TYCT-ECIAIADTGTSLIVGPESVIDDINSKFNGTKINGMTIVLCSNVAKLPVV 715
+ G+ +C+ C AI DTGTS+I GP S I + S + NG V C+ + K+P +
Sbjct: 260 QINGEVVFCSGGCQAIVDTGTSMITGPSSDIVQLQSIIGASAANGDYEVDCTVLNKMPTM 319
Query: 716 NIQIGGRNFPLNSTDYIMKVQDTVCISGFTSL 811
I G + + Y ++ D VC SGF L
Sbjct: 320 TFTINGIGYQMTPQQYTLQDDDGVCSSGFQGL 351
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,058,388
Number of Sequences: 369166
Number of extensions: 1955377
Number of successful extensions: 5554
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5203
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)