Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_D02
(822 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-intera... 42 0.002
sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-intera... 42 0.002
sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interact... 42 0.002
sp|P15583|NU5M_LEITA NADH-ubiquinone oxidoreductase chain 5... 31 3.6
sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein ... 30 6.1
sp|O51272|FTSK_BORBU DNA translocase ftsK 30 8.0
sp|P56785|YCF1_ARATH Hypothetical 213.7 kDa protein ycf1 30 8.0
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
(UbcM4-interacting protein 28)
Length = 498
Score = 42.0 bits (97), Expect = 0.002
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1
Query: 661 GYGDTSGGCRCEVDRKKCHPDCIGC 735
G GDTSGGCRC V+ CHP C C
Sbjct: 473 GPGDTSGGCRCRVNGIPCHPSCQNC 497
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
virus X-associated protein 4) (HBV-associated factor 4)
(RING finger protein 54)
Length = 500
Score = 42.0 bits (97), Expect = 0.002
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1
Query: 661 GYGDTSGGCRCEVDRKKCHPDCIGC 735
G GDTSGGCRC V+ CHP C C
Sbjct: 475 GPGDTSGGCRCRVNGIPCHPSCQNC 499
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
interacting with PKC) (Protein kinase C-binding protein
beta-15)
Length = 498
Score = 42.0 bits (97), Expect = 0.002
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1
Query: 661 GYGDTSGGCRCEVDRKKCHPDCIGC 735
G GDTSGGCRC V+ CHP C C
Sbjct: 473 GPGDTSGGCRCRVNGIPCHPSCQNC 497
>sp|P15583|NU5M_LEITA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 101
Score = 31.2 bits (69), Expect = 3.6
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Frame = -2
Query: 620 NILKFFICG-------NFNILMFYLRIYLFIDNGLQTFFIKLINEFSLLEYYL*IMFITI 462
+I+KF+I N + +MF+ R++LFI G FFI F Y+ MFI
Sbjct: 21 DIIKFYILSGVIFYFFNIDCIMFFWRVFLFITMGF-LFFIFTTWYFICFYMYI-CMFIWN 78
Query: 461 LYLYLQLHKFFRMQLLHWSFF 399
L +Y FR L + FF
Sbjct: 79 LVIY------FRYNLKYCLFF 93
>sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein (RoaA)
Length = 519
Score = 30.4 bits (67), Expect = 6.1
Identities = 30/127 (23%), Positives = 51/127 (40%)
Frame = -2
Query: 641 KIKFSHKNILKFFICGNFNILMFYLRIYLFIDNGLQTFFIKLINEFSLLEYYL*IMFITI 462
K + +K L + N N L ++L++ FI NG FFI L + F+
Sbjct: 182 KFNYMNKKWLYKNLTFNINFLKYFLKLNNFIFNGSILFFIFNFMFNGLKSFIQRKCFMNN 241
Query: 461 LYLYLQLHKFFRMQLLHWSFFPIMAQ*CTNCYFFFINF*LDKSLKTIKSLNFEIILRYMK 282
++Y+ K ++ F I C N +F+ + K +NF I ++K
Sbjct: 242 EFIYVSSLKNIYFFFKSYNEFNI----CINYLIYFLKY---------KGINFNFINDHVK 288
Query: 281 IAL*NNI 261
L N +
Sbjct: 289 NFLTNGL 295
>sp|O51272|FTSK_BORBU DNA translocase ftsK
Length = 787
Score = 30.0 bits (66), Expect = 8.0
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Frame = -2
Query: 632 FSHKNILKFFICGNFNILMFYLRIYLFIDNGLQTFFIK------LINEFSLLEYYL*IMF 471
+ + L FF+ +++ F L + L + + FF+ L+N FS L +YL +
Sbjct: 5 YQYFQFLFFFM---LSVISFSLFVALTPLSNVFVFFVFNLLGQILLNVFSFLSFYLIVYP 61
Query: 470 ITILYLYLQLHKFFRMQLLHWSFFPIMAQ*CTNCYFFFINF*LDKS-LKTIKSLNFEIIL 294
I Y Y + H F + + +W++ I+ T + IN ++KS I +NF I+L
Sbjct: 62 IVNWYAY-KKHIFTKRFIFNWNYTVILF--FTLIFLIKINSNVEKSYFIKIFLINFGIVL 118
>sp|P56785|YCF1_ARATH Hypothetical 213.7 kDa protein ycf1
Length = 1786
Score = 30.0 bits (66), Expect = 8.0
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -3
Query: 142 NKILRTTKQKTNKRNYSQSLCRY*IKLIQSSKMLWNQYQSYDT 14
N+I +K+K N N L RY K+I+SSK +W ++ +T
Sbjct: 1025 NQIEEISKEKQNLTNSCTKL-RYDSKIIESSKKIWQTFKRKNT 1066
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,289,831
Number of Sequences: 369166
Number of extensions: 1369896
Number of successful extensions: 2739
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2737
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)