Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_C22
(610 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26308|GBB1_DROME Guanine nucleotide-binding protein bet... 45 1e-04
sp|P29387|GBB4_MOUSE Guanine nucleotide-binding protein bet... 44 3e-04
sp|Q61011|GBB3_MOUSE Guanine nucleotide-binding protein G(I... 44 3e-04
sp|O35353|GBB4_RAT Guanine nucleotide-binding protein beta ... 44 3e-04
sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein bet... 44 3e-04
sp|P52287|GBB3_RAT Guanine nucleotide-binding protein G(I)/... 44 3e-04
sp|P16520|GBB3_HUMAN Guanine nucleotide-binding protein G(I... 44 3e-04
sp|P54311|GBB1_RAT Guanine nucleotide-binding protein G(I)/... 44 3e-04
sp|P11017|GBB2_BOVIN Guanine nucleotide-binding protein G(I... 44 3e-04
sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/... 44 3e-04
>sp|P26308|GBB1_DROME Guanine nucleotide-binding protein beta subunit 1
Length = 340
Score = 45.4 bits (106), Expect = 1e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIW 92
HD RVSC+ V+ NG+ +ATGSWDS +W
Sbjct: 311 HDNRVSCLGVTENGMAVATGSWDSFLRVW 339
Score = 30.4 bits (67), Expect = 3.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIWTSKPSQ 110
H+ ++ V+ PNG ATGS D++C ++ + Q
Sbjct: 225 HESDINAVTFFPNGQAFATGSDDATCRLFDIRADQ 259
>sp|P29387|GBB4_MOUSE Guanine nucleotide-binding protein beta subunit 4 (Transducin beta
chain 4)
Length = 340
Score = 43.9 bits (102), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIW 92
HD RVSC+ V+ +G+ +ATGSWDS IW
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLRIW 339
>sp|Q61011|GBB3_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 3
(Transducin beta chain 3)
Length = 340
Score = 43.9 bits (102), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIW 92
HD RVSC+ V+ +G+ +ATGSWDS IW
Sbjct: 311 HDNRVSCLGVTADGMAVATGSWDSFLKIW 339
Score = 30.4 bits (67), Expect = 3.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIWTSKPSQ 110
H+ ++ + PNG I TGS D+SC ++ + Q
Sbjct: 225 HESDINAICFFPNGEAICTGSDDASCRLFDLRADQ 259
>sp|O35353|GBB4_RAT Guanine nucleotide-binding protein beta subunit 4 (Transducin beta
chain 4)
Length = 340
Score = 43.9 bits (102), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIW 92
HD RVSC+ V+ +G+ +ATGSWDS IW
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLRIW 339
>sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein beta subunit 4 (Transducin beta
chain 4)
Length = 340
Score = 43.9 bits (102), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIW 92
HD RVSC+ V+ +G+ +ATGSWDS IW
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLRIW 339
Score = 30.0 bits (66), Expect = 4.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIWTSKPSQ 110
H ++ VS PNG ATGS D++C ++ + Q
Sbjct: 225 HVSDINAVSFFPNGYAFATGSDDATCRLFDLRADQ 259
>sp|P52287|GBB3_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 3
(Transducin beta chain 3)
Length = 340
Score = 43.9 bits (102), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIW 92
HD RVSC+ V+ +G+ +ATGSWDS IW
Sbjct: 311 HDNRVSCLGVTADGMAVATGSWDSFLKIW 339
Score = 30.4 bits (67), Expect = 3.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIWTSKPSQ 110
H+ ++ + PNG I TGS D+SC ++ + Q
Sbjct: 225 HESDINAICFFPNGEAICTGSDDASCRLFDLRADQ 259
>sp|P16520|GBB3_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 3
(Transducin beta chain 3)
Length = 340
Score = 43.9 bits (102), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIW 92
HD RVSC+ V+ +G+ +ATGSWDS IW
Sbjct: 311 HDNRVSCLGVTADGMAVATGSWDSFLKIW 339
Score = 30.4 bits (67), Expect = 3.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIWTSKPSQ 110
H+ ++ + PNG I TGS D+SC ++ + Q
Sbjct: 225 HESDINAICFFPNGEAICTGSDDASCRLFDLRADQ 259
>sp|P54311|GBB1_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62874|GBB1_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62873|GBB1_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62872|GBB1_CANFA Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62871|GBB1_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 43.9 bits (102), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIW 92
HD RVSC+ V+ +G+ +ATGSWDS IW
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>sp|P11017|GBB2_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
Length = 326
Score = 43.9 bits (102), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIW 92
HD RVSC+ V+ +G+ +ATGSWDS IW
Sbjct: 297 HDNRVSCLGVTDDGMAVATGSWDSFLKIW 325
Score = 29.3 bits (64), Expect = 8.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIWTSKPSQ 110
H+ ++ V+ PNG TGS D++C ++ + Q
Sbjct: 211 HESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQ 245
>sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
sp|P62880|GBB2_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
sp|P62879|GBB2_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
Length = 340
Score = 43.9 bits (102), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIW 92
HD RVSC+ V+ +G+ +ATGSWDS IW
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 29.3 bits (64), Expect = 8.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 6 HDGRVSCVSVSPNGVGIATGSWDSSCLIWTSKPSQ 110
H+ ++ V+ PNG TGS D++C ++ + Q
Sbjct: 225 HESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQ 259
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,827,365
Number of Sequences: 369166
Number of extensions: 990676
Number of successful extensions: 3226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3223
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)