Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_C17
(742 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UHB6|EPLIN_HUMAN Epithelial protein lost in neoplasm 70 5e-12
sp|Q9ERG0|EPLIN_MOUSE Epithelial protein lost in neoplasm (... 70 5e-12
sp|P29675|SF3_HELAN Pollen-specific protein SF3 55 2e-07
sp|P34416|LASP1_CAEEL LIM and SH3 domain protein F42H10.3 49 1e-05
sp|Q14847|LASP1_HUMAN LIM and SH3 domain protein 1 (LASP-1)... 48 2e-05
sp|Q99MZ8|LASP1_RAT LIM and SH3 domain protein 1 (LASP-1) 48 2e-05
sp|Q8BML1|MICA2_MOUSE Protein MICAL-2 48 3e-05
sp|Q61792|LASP1_MOUSE LIM and SH3 domain protein 1 (LASP-1)... 48 3e-05
sp|O94851|MICA2_HUMAN Protein MICAL-2 47 5e-05
sp|P36201|CRIP2_RAT Cysteine-rich protein 2 (CRP2) (Protein... 45 2e-04
>sp|Q9UHB6|EPLIN_HUMAN Epithelial protein lost in neoplasm
Length = 759
Score = 70.5 bits (171), Expect = 5e-12
Identities = 27/54 (50%), Positives = 38/54 (70%)
Frame = +3
Query: 3 EKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHYVELFKKRGRYDE 164
E+L N ++FH +CFRC+ C N LS G ++ HG+ YC PH+ +LFK +G YDE
Sbjct: 401 ERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 454
>sp|Q9ERG0|EPLIN_MOUSE Epithelial protein lost in neoplasm (mEPLIN)
Length = 753
Score = 70.5 bits (171), Expect = 5e-12
Identities = 27/54 (50%), Positives = 38/54 (70%)
Frame = +3
Query: 3 EKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHYVELFKKRGRYDE 164
E+L N ++FH +CFRC+ C N LS G ++ HG+ YC PH+ +LFK +G YDE
Sbjct: 399 ERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 452
>sp|P29675|SF3_HELAN Pollen-specific protein SF3
Length = 219
Score = 55.1 bits (131), Expect = 2e-07
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +3
Query: 3 EKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHYVELFKKRGRYDEIDD 173
+KL N +++HK CFRC C + L NF+ G YC H+ +LFK+ G ++ D
Sbjct: 22 DKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFD 78
Score = 51.6 bits (122), Expect = 2e-06
Identities = 25/100 (25%), Positives = 47/100 (47%)
Frame = +3
Query: 3 EKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHYVELFKKRGRYDEIDDNIE 182
E++ + +H+ CF+C +S N+ + G+ YC H+++LFKK+G Y +++ +E
Sbjct: 121 ERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLE--VE 178
Query: 183 NEILATNDISDVLTDELPAPDTTKNILAKFRDLQTGGNSN 302
+ A PA T+N + + Q N
Sbjct: 179 ETVAA------------PAESETQNTETQNAETQNADTQN 206
>sp|P34416|LASP1_CAEEL LIM and SH3 domain protein F42H10.3
Length = 335
Score = 49.3 bits (116), Expect = 1e-05
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 3 EKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHY 128
E+L DK++HK CF+CT C L+ N+ +PYC PHY
Sbjct: 18 EELKCLDKVWHKQCFKCTVCGMTLNMKNYKGYDKRPYCDPHY 59
>sp|Q14847|LASP1_HUMAN LIM and SH3 domain protein 1 (LASP-1) (MLN 50)
Length = 261
Score = 48.1 bits (113), Expect = 2e-05
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +3
Query: 3 EKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHY 128
EK++ DK +HK CF C CK L+ N+ KPYC HY
Sbjct: 16 EKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHY 57
>sp|Q99MZ8|LASP1_RAT LIM and SH3 domain protein 1 (LASP-1)
Length = 263
Score = 48.1 bits (113), Expect = 2e-05
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +3
Query: 3 EKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHY 128
EK++ DK +HK CF C CK L+ N+ KPYC HY
Sbjct: 16 EKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHY 57
>sp|Q8BML1|MICA2_MOUSE Protein MICAL-2
Length = 960
Score = 47.8 bits (112), Expect = 3e-05
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 3 EKLSTNDKIFHKTCFRCTKCKNALSTGNFSF--NHGKPYCTPHYVEL---FKKRGRYDEI 167
E+LS FH+ CFRC+ C L ++F + GK YC PH+V K+R R E+
Sbjct: 764 ERLSAEGHFFHQECFRCSVCSATLRLAAYAFDCDEGKFYCKPHFVHCKTSSKQRKRRAEL 823
Query: 168 DDNIENE 188
+ E E
Sbjct: 824 NQQREEE 830
>sp|Q61792|LASP1_MOUSE LIM and SH3 domain protein 1 (LASP-1) (MLN 50)
Length = 263
Score = 47.8 bits (112), Expect = 3e-05
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +3
Query: 3 EKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHY 128
EK++ DK +HK CF C CK L+ N+ KPYC HY
Sbjct: 16 EKVNCLDKYWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHY 57
>sp|O94851|MICA2_HUMAN Protein MICAL-2
Length = 1124
Score = 47.0 bits (110), Expect = 5e-05
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +3
Query: 3 EKLSTNDKIFHKTCFRCTKCKNALSTGNFSF--NHGKPYCTPHYVEL---FKKRGRYDEI 167
E+LS FH+ CFRC+ C L ++F + GK YC PH++ K+R R E+
Sbjct: 1013 ERLSAEGHFFHRECFRCSICATTLRLAAYTFDCDEGKFYCKPHFIHCKTNSKQRKRRAEL 1072
Query: 168 DDNIENE 188
E E
Sbjct: 1073 KQQREEE 1079
>sp|P36201|CRIP2_RAT Cysteine-rich protein 2 (CRP2) (Protein ESP1)
Length = 208
Score = 45.1 bits (105), Expect = 2e-04
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 3 EKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYC-TPHYVELFKKRG 152
EK+S+ K +HK C +C +C L+ G + + GKP+C P Y LF +G
Sbjct: 16 EKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFGPKG 66
Score = 42.4 bits (98), Expect = 0.001
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 3 EKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYC-TPHYVELFKKRG 152
EK+++ K +H+ C RC +C L+ G + + G+PYC P Y LF +G
Sbjct: 137 EKVTSLGKDWHRPCLRCERCSKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,004,479
Number of Sequences: 369166
Number of extensions: 1855893
Number of successful extensions: 5408
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5403
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)