Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_C16
(288 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-intera... 55 4e-08
sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interact... 55 4e-08
sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-intera... 54 8e-08
sp|Q9HUN6|Y4928_PSEAE Hypothetical UPF0313 protein PA4928 31 0.77
sp|Q9NWF9|UB7I1_HUMAN E3 ubiquitin ligase TRIAD3 (Ubiquitin... 31 1.0
sp|P58283|UB7I1_MOUSE E3 ubiquitin ligase TRIAD3 (Ubiquitin... 31 1.0
sp|Q6KI35|KAD_MYCMO Adenylate kinase (ATP-AMP transphosphor... 30 1.3
sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-betwe... 30 2.2
sp|P35950|LDLR_CRIGR Low-density lipoprotein receptor precu... 30 2.2
sp|Q924T7|RNF31_MOUSE RING finger protein 31 30 2.2
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
(UbcM4-interacting protein 28)
Length = 498
Score = 55.5 bits (132), Expect = 4e-08
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = +2
Query: 17 RSKLSDIYHCKKPDCKYFGICDDSDLKHFICPICNSFNCIKYNAIHGGQTCEDFQD 184
RS LS YHCK PDC+ + +D D+ F CP+C NC+ AIH C ++QD
Sbjct: 352 RSTLS--YHCKTPDCRGWCFFED-DVNEFTCPVCTRVNCLLCKAIHEHMNCREYQD 404
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
interacting with PKC) (Protein kinase C-binding protein
beta-15)
Length = 498
Score = 55.5 bits (132), Expect = 4e-08
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = +2
Query: 17 RSKLSDIYHCKKPDCKYFGICDDSDLKHFICPICNSFNCIKYNAIHGGQTCEDFQD 184
RS LS YHCK PDC+ + +D D+ F CP+C NC+ AIH C ++QD
Sbjct: 352 RSTLS--YHCKTPDCRGWCFFED-DVNEFTCPVCTRVNCLLCKAIHERMNCREYQD 404
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
virus X-associated protein 4) (HBV-associated factor 4)
(RING finger protein 54)
Length = 500
Score = 54.3 bits (129), Expect = 8e-08
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = +2
Query: 11 LARSKLSDIYHCKKPDCKYFGICDDSDLKHFICPICNSFNCIKYNAIHGGQTCEDFQD 184
+A ++ + YHCK PDCK + +D D+ F CP+C NC+ AIH C+++Q+
Sbjct: 350 IAENRSAFSYHCKTPDCKGWCFFED-DVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQE 406
>sp|Q9HUN6|Y4928_PSEAE Hypothetical UPF0313 protein PA4928
Length = 747
Score = 31.2 bits (69), Expect = 0.77
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 41 HCKKPDCKYFGICDDSDLKH 100
HC+KP C + GIC++ D H
Sbjct: 451 HCRKPSCVFPGICENLDTDH 470
>sp|Q9NWF9|UB7I1_HUMAN E3 ubiquitin ligase TRIAD3 (Ubiquitin conjugating enzyme 7
interacting protein 1) (Zinc finger protein inhibiting
NF-kappa-B)
Length = 866
Score = 30.8 bits (68), Expect = 1.0
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +2
Query: 11 LARSKLSDIYHCKKPDCKYFGICDDSDLKHFIC--PICNSFNCIKYNAI---HGGQTCED 175
+A + ++ C P C + + D SD+K F C P C C K + H G TCE+
Sbjct: 594 VAAAYADELVRC--PSCSFPALLD-SDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEE 650
Query: 176 FQD 184
+
Sbjct: 651 LAE 653
>sp|P58283|UB7I1_MOUSE E3 ubiquitin ligase TRIAD3 (Ubiquitin-conjugating enzyme
7-interacting protein 1) (UbcM4-interacting protein 83)
Length = 853
Score = 30.8 bits (68), Expect = 1.0
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +2
Query: 11 LARSKLSDIYHCKKPDCKYFGICDDSDLKHFIC--PICNSFNCIKYNAI---HGGQTCED 175
+A + ++ C P C + + D SD+K F C P C C K + H G TCE+
Sbjct: 582 VAAAYADELVRC--PSCSFPALLD-SDVKRFSCPNPRCRKETCRKCQGLWKEHNGLTCEE 638
Query: 176 FQD 184
+
Sbjct: 639 LAE 641
>sp|Q6KI35|KAD_MYCMO Adenylate kinase (ATP-AMP transphosphorylase)
Length = 217
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 104 ICPICNSFNCIKYNAIHGGQTCED 175
ICPIC S +KYN G+ CE+
Sbjct: 128 ICPICKSIYHLKYNPSKKGEFCEN 151
>sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-between-RING-finger
ubiquitin-associated domain protein)
Length = 1072
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +2
Query: 68 FGICDDSDLKHFICPICNSFNCIK----YNAIHGGQTCEDFQD 184
FG + + CP C+ C++ + H G++CEDFQ+
Sbjct: 804 FGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 846
>sp|P35950|LDLR_CRIGR Low-density lipoprotein receptor precursor (LDL receptor)
Length = 854
Score = 29.6 bits (65), Expect = 2.2
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Frame = +2
Query: 38 YHCKKPDCKYFG-ICDDS-------DLKHFICPIC--NSFNCIKYNAIHGGQTCEDFQDS 187
+HC +C + +CD S D +H + C + F C IHG + C+ D
Sbjct: 203 FHCGSSECIHRSWVCDGSADCKDKSDEEHCVTATCRPDEFQCADGTCIHGSRQCDREYDC 262
Query: 188 RNRPNTL 208
++ + L
Sbjct: 263 KDMSDEL 269
>sp|Q924T7|RNF31_MOUSE RING finger protein 31
Length = 1066
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +2
Query: 68 FGICDDSDLKHFICPICNSFNCIK----YNAIHGGQTCEDFQD 184
FG + + CP C+ C++ + H G++CEDFQ+
Sbjct: 798 FGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 840
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,149,443
Number of Sequences: 369166
Number of extensions: 472011
Number of successful extensions: 1113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)