Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_C06
(916 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JI13|SAS10_MOUSE Something about silencing protein 10 ... 56 1e-07
sp|Q9NQZ2|SAS10_HUMAN Something about silencing protein 10 ... 55 2e-07
sp|Q6AXX4|SAS10_RAT Something about silencing protein 10 (D... 55 3e-07
sp|Q12136|SAS10_YEAST Something about silencing protein 10 ... 42 0.002
>sp|Q9JI13|SAS10_MOUSE Something about silencing protein 10 (Disrupter of silencing SAS10)
(Charged amino acid-rich leucine zipper 1) (Crl-1)
Length = 469
Score = 56.2 bits (134), Expect = 1e-07
Identities = 26/56 (46%), Positives = 35/56 (62%)
Frame = +1
Query: 688 RPVSKRIMDNKGLVPRRKKADANPRVKHRMKFKKAIVKYHSNVPRNRDDTGNYEGD 855
R ++ +I N+GL PRRKK D NPRVKHR KF+KA ++ V R + Y G+
Sbjct: 399 RAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRKAKIRRRGQVREVRREEQRYSGE 454
>sp|Q9NQZ2|SAS10_HUMAN Something about silencing protein 10 (Disrupter of silencing SAS10)
(Charged amino acid-rich leucine zipper 1)
Length = 479
Score = 55.5 bits (132), Expect = 2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +1
Query: 688 RPVSKRIMDNKGLVPRRKKADANPRVKHRMKFKKAIVKYHSNVPRNRDDTGNYEGD 855
R ++ +I N+GL PRRKK D NPRVKHR KF++A ++ V R + Y G+
Sbjct: 409 RAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRRAKIRRRGQVREVRKEEQRYSGE 464
>sp|Q6AXX4|SAS10_RAT Something about silencing protein 10 (Disrupter of silencing SAS10)
(Charged amino acid-rich leucine zipper 1)
Length = 470
Score = 55.1 bits (131), Expect = 3e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +1
Query: 688 RPVSKRIMDNKGLVPRRKKADANPRVKHRMKFKKAIVKYHSNVPRNRDDTGNYEGD 855
R ++ +I N+GL PRRKK D NPRVKHR KF++A ++ V R + Y G+
Sbjct: 400 RAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRRAKIRRRGQVREVRREEQRYSGE 455
>sp|Q12136|SAS10_YEAST Something about silencing protein 10 (U3 small nucleolar
RNA-associated protein 3) (U3 snoRNA-associated protein
11)
Length = 610
Score = 42.4 bits (98), Expect = 0.002
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 688 RPVSKRIMDNKGLVPRRKKADANPRVKHRMKFKKAIVKYHS-NVPRNRDDTGNYEGD 855
R ++ +I+ NKGL P+R K + N RVK R K++KA K S + +G YEG+
Sbjct: 538 RAINYQILKNKGLTPKRNKDNRNSRVKKRKKYQKAQKKLKSVRAVYSGGQSGVYEGE 594
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,663,553
Number of Sequences: 369166
Number of extensions: 1322683
Number of successful extensions: 3056
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3056
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9318621220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)