Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_B22
(218 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BYT1|CT059_HUMAN Putative transporter C20orf59 73 2e-13
sp|Q8VCL5|CT059_MOUSE Putative transporter C20orf59 homolog 69 3e-12
sp|Q9MZD1|S17A5_SHEEP Sialin (Solute carrier family 17 memb... 37 0.018
sp|Q9NRA2|S17A5_HUMAN Sialin (Solute carrier family 17 memb... 35 0.053
sp|O00624|NPT3_HUMAN Sodium-dependent phosphate transport p... 34 0.091
sp|O00476|NPT4_HUMAN Sodium-dependent phosphate transport p... 33 0.26
sp|Q8BN82|S17A5_MOUSE Sialin (Solute carrier family 17 memb... 33 0.26
sp|P34644|YOQ6_CAEEL Hypothetical protein ZK512.6 in chromo... 32 0.34
sp|P39398|YJJL_ECOLI Inner membrane transport protein yjjL 32 0.59
sp|P37489|YYBO_BACSU Hypothetical transport protein yybO 31 0.77
>sp|Q9BYT1|CT059_HUMAN Putative transporter C20orf59
Length = 436
Score = 72.8 bits (177), Expect = 2e-13
Identities = 29/62 (46%), Positives = 43/62 (69%)
Frame = +1
Query: 28 LPWKCLLSKSAFWAMLYGHFTHSNCVVILISWLPSYFHDNFPDAKSWVFNVVPYLINIPS 207
+PW+ L K A WA + + + IL+SWLP++F + FPDAK W+FNVVP+L+ IP+
Sbjct: 230 VPWRRLFRKPAVWAAVVSQLSAACSFFILLSWLPTFFEETFPDAKGWIFNVVPWLVAIPA 289
Query: 208 TL 213
+L
Sbjct: 290 SL 291
>sp|Q8VCL5|CT059_MOUSE Putative transporter C20orf59 homolog
Length = 439
Score = 69.3 bits (168), Expect = 3e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 22 SSLPWKCLLSKSAFWAMLYGHFTHSNCVVILISWLPSYFHDNFPDAKSWVFNVVPYLINI 201
S +PW+ L K++ WA + + IL+SWLP++F + FP++K WVFNVVP+++ I
Sbjct: 231 SKVPWRQLFRKASVWAAICSQLCSACSFFILLSWLPTFFKETFPNSKGWVFNVVPWMLAI 290
Query: 202 PSTL 213
P++L
Sbjct: 291 PASL 294
>sp|Q9MZD1|S17A5_SHEEP Sialin (Solute carrier family 17 member 5) (Sodium/sialic acid
cotransporter) (Membrane glycoprotein SP55)
Length = 495
Score = 36.6 bits (83), Expect = 0.018
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 4 SSLQPTSSLPWKCLLSKSAFWAMLYGHFTHSNCVVILISWLPSYFHD--NFPDAKSWVFN 177
+ L S+PW +L WA++ HF+++ L++ LP+Y + F ++ +
Sbjct: 272 NQLSSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLS 331
Query: 178 VVPYL 192
VPYL
Sbjct: 332 AVPYL 336
>sp|Q9NRA2|S17A5_HUMAN Sialin (Solute carrier family 17 member 5) (Sodium/sialic acid
cotransporter) (AST) (Membrane glycoprotein HP59)
Length = 495
Score = 35.0 bits (79), Expect = 0.053
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 4 SSLQPTSSLPWKCLLSKSAFWAMLYGHFTHSNCVVILISWLPSYFHD--NFPDAKSWVFN 177
+ L S+PW +L WA++ HF+++ L++ LP+Y + F ++ +
Sbjct: 272 NQLSSQKSVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLS 331
Query: 178 VVPYL 192
+PYL
Sbjct: 332 SLPYL 336
>sp|O00624|NPT3_HUMAN Sodium-dependent phosphate transport protein 3 (Sodium/phosphate
cotransporter 3) (Na(+)/PI cotransporter 3) (Solute
carrier family 18 member 2)
Length = 436
Score = 34.3 bits (77), Expect = 0.091
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +1
Query: 16 PTSSLPWKCLLSKSAFWAMLYGHFTHSNCVVILISWLPSY----FHDNFPDAKSWVFNVV 183
P ++P K +++ WA+ G F+H I++++LP+Y H N D S V + +
Sbjct: 260 PGRAVPIKAMVTCLPLWAIFLGFFSHFWLCTIILTYLPTYISTLLHVNIRD--SGVLSSL 317
Query: 184 PYLINIPSTLV 216
P++ T++
Sbjct: 318 PFIAAASCTIL 328
>sp|O00476|NPT4_HUMAN Sodium-dependent phosphate transport protein 4 (Sodium/phosphate
cotransporter 4) (Na(+)/PI cotransporter 4) (Solute
carrier family 18 member 3)
Length = 401
Score = 32.7 bits (73), Expect = 0.26
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +1
Query: 4 SSLQPTSSLPWKCLLSKSAFWAMLYGHFTHSNCVVILISWLPSY----FHDNFPDAKSWV 171
SS QP LP K +L W++ G F+H V ++ ++P+Y +H N D + +
Sbjct: 183 SSKQP---LPIKAMLRSLPIWSICLGCFSHQWLVSTMVVYIPTYISSVYHVNIRD--NGL 237
Query: 172 FNVVPYLI 195
+ +P+++
Sbjct: 238 LSALPFIV 245
>sp|Q8BN82|S17A5_MOUSE Sialin (Solute carrier family 17 member 5) (Sodium/sialic acid
cotransporter)
Length = 495
Score = 32.7 bits (73), Expect = 0.26
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 SSLQPTSSLPWKCLLSKSAFWAMLYGHFTHSNCVVILISWLPSYFHD--NFPDAKSWVFN 177
+ L +PW +L WA++ HF+++ L++ LP+Y + F ++ +
Sbjct: 272 NQLSSQKVVPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLS 331
Query: 178 VVPY 189
+PY
Sbjct: 332 ALPY 335
>sp|P34644|YOQ6_CAEEL Hypothetical protein ZK512.6 in chromosome III
Length = 576
Score = 32.3 bits (72), Expect = 0.34
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 1 ISSLQPT-SSLPWKCLLSKSAFWAMLYGHFTHSNCVVILISWLPSYFHD--NFPDAKSWV 171
+S+ PT S+PWK +++ WA++ +F S +L+ +Y + A S +
Sbjct: 286 VSNTHPTIRSIPWKAIVTSKPVWAIIVANFARSWTFYLLLQNQLTYMKEALGMKIADSGL 345
Query: 172 FNVVPYLI 195
+P+L+
Sbjct: 346 LAAIPHLV 353
>sp|P39398|YJJL_ECOLI Inner membrane transport protein yjjL
Length = 453
Score = 31.6 bits (70), Expect = 0.59
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = +1
Query: 16 PTSSLPWKCLLSKSAFWAMLYGHFTHSNCVVILISWLPSYFHDNFP-DAKS-WVFNVVPY 189
P S W+ L W M+ G + + ++WLP Y + D KS + +P+
Sbjct: 244 PLSFAEWRSLFRNRTMWGMMLGFSGINYTAWLYLAWLPGYLQTAYNLDLKSTGLMAAIPF 303
Query: 190 LINIPSTLV 216
L LV
Sbjct: 304 LFGAAGMLV 312
>sp|P37489|YYBO_BACSU Hypothetical transport protein yybO
Length = 435
Score = 31.2 bits (69), Expect = 0.77
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Frame = +1
Query: 19 TSSLPWKC------LLSKSAFWAMLYGHFTHSNCVVILISWLPSYFHDNF--PDAKSWVF 174
T +P+K L + W ++ G + +L++WLP++F + S +F
Sbjct: 222 TEQIPYKTGPLLKKLFTNRKVWGLMIGFTGYGYTFNLLLTWLPTFFKHTYGMDLMSSGLF 281
Query: 175 NVVPYLIN 198
VP+LI+
Sbjct: 282 TAVPWLIS 289
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,358,887
Number of Sequences: 369166
Number of extensions: 556299
Number of successful extensions: 1350
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 68,354,980
effective HSP length: 44
effective length of database: 60,226,640
effective search space used: 1686345920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)