Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_B15
(892 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13233|CN37_RAT 2',3'-cyclic-nucleotide 3'-phosphodieste... 41 0.005
sp|P16330|CN37_MOUSE 2',3'-cyclic-nucleotide 3'-phosphodies... 38 0.043
sp|Q01454|CTF4_YEAST DNA polymerase alpha-binding protein (... 35 0.22
sp|P34233|ASH1_YEAST Daughter cells HO repressor protein ASH1 35 0.22
sp|Q8TDX6|CGAT1_HUMAN Chondroitin beta-1,4-N-acetylgalactos... 34 0.63
sp|Q9ZD20|ODP2_RICPR Dihydrolipoyllysine-residue acetyltran... 33 0.82
sp|Q8C1F4|CGAT2_MOUSE Chondroitin beta-1,4-N-acetylgalactos... 33 1.4
sp|Q73T66|CLPB_MYCPA Chaperone clpB 33 1.4
sp|Q01649|CIK1_YEAST Spindle pole body-associated protein 32 2.4
sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 precursor (Lig... 32 2.4
>sp|P13233|CN37_RAT 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 420
Score = 40.8 bits (94), Expect = 0.005
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 18/186 (9%)
Frame = +3
Query: 354 PTFTGWFWNNHFQKELHYYRRKF---------FKQILKIDNVKDQLKPLSDELEKFWVKQ 506
P + GWF + L + F FK+ L+ D+ K D + F +
Sbjct: 186 PLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLDLVSYFGKRP 245
Query: 507 SKRLHVTAMYIGRQEDDKSKNYLEK--VRKQFFITTKAKVTGILLTPRNISGHVEITEDL 680
LH T + + ++ Y ++ VR+ + K ++ + +TP+ V + E
Sbjct: 246 PGVLHCTTKFCDYGKATGAEEYAQQDVVRRSYGKAFKLSISALFVTPKTAGAQVVLNEQE 305
Query: 681 KGVF--DPDQQDKFKLL-----THVTLGTSSQGNPVDSGPDQVDVQTMINDKKTPVQEFE 839
++ D D+ + L HVTLG ++ PV +G D +++ + + E
Sbjct: 306 LQLWPSDLDKPSSSESLPPGSRAHVTLGCAADVQPVQTGLDLLEILQQVKGGSQGEEVGE 365
Query: 840 LEIGKL 857
L GKL
Sbjct: 366 LPRGKL 371
>sp|P16330|CN37_MOUSE 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 420
Score = 37.7 bits (86), Expect = 0.043
Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 19/187 (10%)
Frame = +3
Query: 354 PTFTGWFWNNHFQKELHYYRRKF---------FKQILKIDNVKDQLKPLSDELEKFWVKQ 506
P + GWF + L + F FK+ L+ D+ K + + F +
Sbjct: 186 PLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRP 245
Query: 507 SKRLHVTAMYIGRQEDDKSKNYLEK--VRKQFFITTKAKVTGILLTPRNISGHVEITEDL 680
LH T + + ++ Y ++ V++ + K ++ + +TP+ V +T+
Sbjct: 246 PGVLHCTTKFCDYGKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQVVLTDQE 305
Query: 681 KGVFDPDQQDKFKLL--------THVTLGTSSQGNPVDSGPDQVDVQTMINDKKTPVQEF 836
++ P DK HVTLG ++ PV +G D +D+ +
Sbjct: 306 LQLW-PSDLDKPSASEGLPPGSRAHVTLGCAADVQPVQTGLDLLDILQQVKGGSQGEAVG 364
Query: 837 ELEIGKL 857
EL GKL
Sbjct: 365 ELPRGKL 371
>sp|Q01454|CTF4_YEAST DNA polymerase alpha-binding protein (CTF4 protein) (Protein POB1)
(Chromosome replication protein CHL15)
Length = 927
Score = 35.4 bits (80), Expect = 0.22
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Frame = +3
Query: 231 HFIIDCNCNVKDLISIK--------------SKAHFMPIQLDFIDGNMNISSFLNPTFTG 368
HF + C + + SIK +KAHF+ +Q D + G + LN T
Sbjct: 243 HFALPCADDTVKIFSIKGYSLQKTLSTNLSSTKAHFIDLQFDPLRGTYIAAVDLNNKLTV 302
Query: 369 WFWNNHFQKELHYYRRKFFKQILKIDNVKDQLKPLSDELE 488
W W E+HY R FK+ KI N+ +++ S L+
Sbjct: 303 WNWET---SEIHYTRE--FKR--KITNIAWKIQADSKTLD 335
>sp|P34233|ASH1_YEAST Daughter cells HO repressor protein ASH1
Length = 588
Score = 35.4 bits (80), Expect = 0.22
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +3
Query: 216 KTNVTHFIIDCNCNVKDLISIKSK-AHFMPIQLDFIDGNMNISSF-----LNPTFTGWFW 377
KT++TH+ D N +D + I+ + AHF P+ + + N N SF L T + F
Sbjct: 195 KTDLTHWCKDTN--YQDYVKIREEVAHFKPLSIPNLTNNQNNDSFNYGKELESTRSSKF- 251
Query: 378 NNHFQKELHYYRRKFFKQILKIDNVKDQLKPLSD 479
H + + R K IL+ KDQ K LS+
Sbjct: 252 --HSPSKESFDRTKLIPSILE---AKDQFKDLSN 280
>sp|Q8TDX6|CGAT1_HUMAN Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 1
(beta4GalNAcT-1)
Length = 532
Score = 33.9 bits (76), Expect = 0.63
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Frame = +3
Query: 312 DFIDGNMNISSFLNPTFTGWFWNNHFQKELHYYRRKFFKQILKIDNVK--------DQLK 467
DFI+G + F +H + + F I+K+ N K + +
Sbjct: 208 DFIEGIYRTERDKGTLYELTFKGDHKHEFKRLILFRPFSPIMKVKNEKLNMANTLINVIV 267
Query: 468 PLSDELEKF----------WVKQSKRLHVTAMYIGRQEDDKSKNYLEKVRK 590
PL+ ++KF ++Q R+H+T +Y G++E ++ K LE K
Sbjct: 268 PLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVYFGKEEINEVKGILENTSK 318
>sp|Q9ZD20|ODP2_RICPR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase complex (E2) (Dihydrolipoamide
acetyltransferase component of pyruvate dehydrogenase
complex)
Length = 408
Score = 33.5 bits (75), Expect = 0.82
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 156 YRSVDTHHMKQDDIEVLLKTKTNVTHFIIDCNCNVKDLISIK 281
YRSV +++++ + LL++K V HF + CNV L+ ++
Sbjct: 181 YRSVPNNNIRKIIAKRLLESKQTVPHFYLSIECNVDKLLDVR 222
>sp|Q8C1F4|CGAT2_MOUSE Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2
(GalNAcT-2) (beta4GalNAcT-2)
Length = 542
Score = 32.7 bits (73), Expect = 1.4
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 18/112 (16%)
Frame = +3
Query: 312 DFIDGNMNISSFLNPTFTGWFWNNHFQKELHYYRRKFFKQILKIDN--------VKDQLK 467
DFI+G + +F + H + F ++K+ N V + +
Sbjct: 217 DFIEGYYRTERDKGTQYELFFKKADLMEYRHVTLFRPFGPLMKVKNELIDITRSVINIIV 276
Query: 468 PLSDELEKF----------WVKQSKRLHVTAMYIGRQEDDKSKNYLEKVRKQ 593
PL++ E F + Q KR+H+T +Y G++ K K+ LE V +
Sbjct: 277 PLAERTEAFSQFMQNFRDVCIHQDKRIHLTVVYFGKEGLSKVKSILESVSSE 328
>sp|Q73T66|CLPB_MYCPA Chaperone clpB
Length = 848
Score = 32.7 bits (73), Expect = 1.4
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +3
Query: 477 DELEKFWVKQSKRLHVTAMYIGRQEDDKSKNYLEKVRKQFFITTKAKVTGILLTPRNISG 656
DE+E+ +RL + M + ++ED+ SK LEK+R + K K+ + +N
Sbjct: 414 DEVERL----VRRLEIEEMALAKEEDEASKERLEKLRSE-LADQKEKLAELTTRWQNEKN 468
Query: 657 HVEITEDLK 683
+++ +LK
Sbjct: 469 AIDVVRELK 477
>sp|Q01649|CIK1_YEAST Spindle pole body-associated protein
Length = 594
Score = 32.0 bits (71), Expect = 2.4
Identities = 19/87 (21%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Frame = +3
Query: 375 WNNHFQKELHYYRRKFFKQILKIDNVK------DQLKPLSDELEKFWVKQSKRLHVTAMY 536
+ N ++EL +R++ ++++++N+K D+++ L E E+ +++L +
Sbjct: 177 FENDLEEELSNAKREWTYKLMEVENLKPDERLTDEMRQLKTEFEEV----NRKLFI---- 228
Query: 537 IGRQEDDKSKNYLEKVRKQFFITTKAK 617
+ + +++ KNY +++ K+F I K K
Sbjct: 229 LQNENENECKNYKKELDKKFEIFKKVK 255
>sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7)
Length = 949
Score = 32.0 bits (71), Expect = 2.4
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = +3
Query: 333 NISSF-----LNPTFTGWFWNNHFQKELHYYRRKFFKQILKIDNV-KDQLKPLSDELE 488
N++SF L PT T W F K + Y R F +++LK + QLKP +E
Sbjct: 661 NLTSFFTVKLLQPTVTNWKDLIKFNKNIGYQRGTFVRELLKSQGFDESQLKPFGSAVE 718
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,425,125
Number of Sequences: 369166
Number of extensions: 2108138
Number of successful extensions: 5107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5107
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)