Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_A21
(692 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal ... 38 0.022
sp|Q12267|SMC4_YEAST Structural maintenance of chromosome 4 36 0.084
sp|P12882|MYH1_HUMAN Myosin-1 (Myosin heavy chain, skeletal... 35 0.25
sp|Q57828|Y383_METJA Hypothetical protein MJ0383 35 0.25
sp|P70398|USP9X_MOUSE Probable ubiquitin carboxyl-terminal ... 34 0.32
sp|P41467|Y066_NPVAC HYPOTHETICAL 94.0 KD PROTEIN IN POL-LE... 34 0.42
sp|P11055|MYH3_HUMAN Myosin heavy chain, fast skeletal musc... 34 0.42
sp|Q57588|Y124_METJA Hypothetical protein MJ0124 34 0.42
sp|P14105|MYH9_CHICK Myosin-9 (Myosin heavy chain, nonmuscl... 34 0.42
sp|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal muscle, a... 33 0.55
>sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X (Ubiquitin
thiolesterase FAF-X) (Ubiquitin specific-processing
protease FAF-X) (Deubiquitinating enzyme FAF-X) (Fat
facets protein related, X-linked) (Ubiquitin-specific
protease 9, X chromosome)
Length = 2547
Score = 38.1 bits (87), Expect = 0.022
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Frame = -2
Query: 652 GDRNLWYKFDEIDI---------EMKNKCKKDELLIEFDEKFD-MKMNARYCDMKEEWNE 503
G+RN WYKFD+ D+ EMKN+C E + E FD M Y K WN
Sbjct: 1885 GERNRWYKFDDGDVTECKMDDDEEMKNQCFGGEYM---GEVFDHMMKRMSYRRQKRWWNA 1941
Query: 502 --KFDEKIEKMREENEKLDQIERV 437
F E+++ + +++E + I +
Sbjct: 1942 YILFYERMDTIDQDDELIRYISEL 1965
>sp|Q12267|SMC4_YEAST Structural maintenance of chromosome 4
Length = 1418
Score = 36.2 bits (82), Expect = 0.084
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Frame = -2
Query: 691 KEENEDLRDQMELGDRNLWYKFDEIDIEMKNKCKKDELLIEF-------DEKFDMKMNAR 533
KE++E L++QME + ++ +F I+IEMKNK +K L+ + EK +++ R
Sbjct: 1062 KEQSEQLKEQMEDMEESI-NEFKSIEIEMKNKLEKLNSLLTYIKSEITQQEKGLNELSIR 1120
Query: 532 YCDMKEEWNEKFDEKIEKMREE---NEKLDQ 449
D+ D K++ ++E+ N++LDQ
Sbjct: 1121 --DVTHTLGMLDDNKMDSVKEDVKNNQELDQ 1149
>sp|P12882|MYH1_HUMAN Myosin-1 (Myosin heavy chain, skeletal muscle, adult 1) (Myosin heavy
chain IIx/d) (MyHC-IIx/d)
Length = 1939
Score = 34.7 bits (78), Expect = 0.25
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = -2
Query: 628 FDEIDIEMKNKCKKDELLIEFDEKFDMKMNARYCDMKEEWNEKFDEKIEKMREENEKLDQ 449
FD+I E K KC++ +E +K ++ +K + E D+ +E ++ EN+ L Q
Sbjct: 1453 FDKILAEWKQKCEETHAELEASQKESRSLSTELFKIKNAYEESLDQ-LETLKRENKNLQQ 1511
>sp|Q57828|Y383_METJA Hypothetical protein MJ0383
Length = 614
Score = 34.7 bits (78), Expect = 0.25
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = -2
Query: 634 YKFDEIDIEMKNKCKKDELLIEFDEKFDMKMNARYCDMKEEWNEKFDEKIEKMREENEK- 458
Y + + ++KNK +IEF+ K+ ++++ + +K +W EKFD+K E ++E +EK
Sbjct: 531 YPLENAEEKVKNK-----EIIEFNPKYVIRVSYNW--LKNKW-EKFDKKFELIKEYDEKG 582
Query: 457 -LDQIERVNKIDKY 419
+ +++ K+ Y
Sbjct: 583 WICSLKKAGKLQPY 596
>sp|P70398|USP9X_MOUSE Probable ubiquitin carboxyl-terminal hydrolase FAF-X (Ubiquitin
thiolesterase FAF-X) (Ubiquitin specific-processing
protease FAF-X) (Deubiquitinating enzyme FAF-X) (Fat
facets protein related, X-linked) (Ubiquitin-specific
protease 9, X chromosome) (Ubiquitin carboxyl-terminal
hydrolase FAM) (Fat facets homolog)
Length = 2559
Score = 34.3 bits (77), Expect = 0.32
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Frame = -2
Query: 652 GDRNLWYKFDEIDI---------EMKNKCKKDELLIEFDEKFDMKMNARYCDMKEEWNE- 503
G++N WYKFD+ D+ EMK +C E + E + +M+ Y K WN
Sbjct: 1892 GEKNRWYKFDDGDVTECKMDDDEEMKTQCFGGEYMGEVLDHMMKRMS--YRRQKRWWNAY 1949
Query: 502 -KFDEKIEKMREENEKLDQIERV 437
F E+++ + ++E + I +
Sbjct: 1950 ILFYERMDTIGHDDEVIRYISEI 1972
>sp|P41467|Y066_NPVAC HYPOTHETICAL 94.0 KD PROTEIN IN POL-LEF3 INTERGENIC REGION
Length = 808
Score = 33.9 bits (76), Expect = 0.42
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 11/80 (13%)
Frame = -2
Query: 586 DELLIEFDEKFDMKM--------NARYCDMKEEWNEKFDEKIEKMREEN-EKLDQIE-RV 437
DEL +++ E F+ K N R E N++ ++ ++K+R+EN E+L +I+ +
Sbjct: 347 DELDLKYKEIFEDKSEFAQQKSENVRKIKQLERSNKELNDTVQKLRDENAERLSEIQLQK 406
Query: 436 NKIDKYLNM-RDFGELIWQI 380
+D+Y NM R E I+++
Sbjct: 407 GDLDEYKNMNRQLNEDIYKL 426
>sp|P11055|MYH3_HUMAN Myosin heavy chain, fast skeletal muscle, embryonic (Muscle embryonic
myosin heavy chain) (SMHCE)
Length = 1940
Score = 33.9 bits (76), Expect = 0.42
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = -2
Query: 628 FDEIDIEMKNKCKKDELLIEFDEKFDMKMNARYCDMKEEWNEKFDEKIEKMREENEKLDQ 449
FD++ E K KC++ + +E K ++ +K + E D+ +E ++ EN+ L+Q
Sbjct: 1450 FDKVLAEWKTKCEESQAELEASLKESRSLSTELFKLKNAYEEALDQ-LETVKRENKNLEQ 1508
>sp|Q57588|Y124_METJA Hypothetical protein MJ0124
Length = 1075
Score = 33.9 bits (76), Expect = 0.42
Identities = 22/85 (25%), Positives = 36/85 (42%)
Frame = -2
Query: 574 IEFDEKFDMKMNARYCDMKEEWNEKFDEKIEKMREENEKLDQIERVNKIDKYLNMRDFGE 395
+ F + D + ++ D E+W E + E+ + IE + K+ K N DF
Sbjct: 579 VRFKKALDKYLKEKFGDEAEKWAEV----VMTYHHNEEEKEIIEYMKKLKKERNSNDF-- 632
Query: 394 LIWQIGKINEIKWMISERFYDKQNP 320
NEI +I E F + +NP
Sbjct: 633 --------NEINQIIREEFLNSENP 649
>sp|P14105|MYH9_CHICK Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy
chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin
heavy chain, type A) (Nonmuscle myosin heavy chain-A)
(NMMHC-A)
Length = 1959
Score = 33.9 bits (76), Expect = 0.42
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Frame = -2
Query: 688 EENEDLRDQMELGDRNLWYKFDEIDIEMKNKCKK-----DELLIEFDEKFDMKMNARYCD 524
++NE+ R QME ++ L K E++ +K+K K + +++ +E+ DM+ R
Sbjct: 1774 QKNENARQQMERQNKELKLKLQEMESAVKSKYKATITALEAKIVQLEEQLDMETKERQAA 1833
Query: 523 MKEEWNEKFDEKIEKMREENEKLDQIERVNKIDKYLNMR 407
K+ + K ++ ++E+ + + ++ DK NMR
Sbjct: 1834 SKQVRRAEKKLKDILLQVDDERRNAEQFKDQADK-ANMR 1871
>sp|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal muscle, adult 2 (Myosin heavy chain IIa)
(MyHC-IIa)
Length = 1941
Score = 33.5 bits (75), Expect = 0.55
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 628 FDEIDIEMKNKCKKDELLIEFDEKFDMKMNARYCDMKEEWNEKFDEKIEKMREENEKLDQ 449
FD+I E K KC++ +E +K + +K + E D+ +E ++ EN+ L Q
Sbjct: 1455 FDKILAEWKQKCEETHAELEASQKEARSLGTELFKIKNAYEESLDQ-LETLKRENKNLQQ 1513
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,774,205
Number of Sequences: 369166
Number of extensions: 1147451
Number of successful extensions: 4535
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4508
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)