Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_A07
(800 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-r... 100 8e-21
sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-r... 99 2e-20
sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen relat... 77 7e-14
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 73 8e-13
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 73 8e-13
sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precur... 72 2e-12
sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3) 72 2e-12
sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 pr... 71 3e-12
sp|P36110|PRY2_YEAST PRY2 protein precursor (Pathogen relat... 70 5e-12
sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related pro... 70 5e-12
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 99.8 bits (247), Expect = 8e-21
Identities = 58/133 (43%), Positives = 79/133 (59%), Gaps = 5/133 (3%)
Frame = +1
Query: 1 PKLTIDWDLAKSAQAYAEKLAKTKTFSHSV--SNGQYGENLA-SSYNSREGYVFTGDAAT 171
P L + +L + AQ Y+E LA T+ HS S GQ GENLA +SY+ TG
Sbjct: 27 PPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQ------TGKEVA 80
Query: 172 QNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNV 351
WY EIK+Y F ++ S GHF+ +VWK+TK G G+A + +G+ +V +Y PAGNV
Sbjct: 81 DRWYSEIKNYNF-QQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNV 139
Query: 352 I--GHFKENVLSP 384
+ G F+ENVL P
Sbjct: 140 VNEGFFEENVLPP 152
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 98.6 bits (244), Expect = 2e-20
Identities = 59/140 (42%), Positives = 80/140 (57%), Gaps = 5/140 (3%)
Frame = +1
Query: 1 PKLTIDWDLAKSAQAYAEKLAKTKTFSHSV--SNGQYGENLA-SSYNSREGYVFTGDAAT 171
P L + L + AQ Y+E LA T+ HS S GQ GENLA +SY+ TG
Sbjct: 27 PPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQ------TGKDVA 80
Query: 172 QNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNV 351
WY EIK Y F ++ S GHF+ +VWK+TK G G+A + +G+ +V +Y PAGN+
Sbjct: 81 DRWYSEIKSYNF-QQPGFTSGTGHFTAMVWKNTKKIGVGKASASDGSSFVVARYFPAGNI 139
Query: 352 I--GHFKENVLSPTGPPPKR 405
+ G F+ENV PPPK+
Sbjct: 140 VNQGFFEENV-----PPPKK 154
>sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen related in Sc 1)
Length = 299
Score = 76.6 bits (187), Expect = 7e-14
Identities = 51/127 (40%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Frame = +1
Query: 1 PKLTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNW 180
P L+ LA AQ YA+ + T +HS G YGENLA Y+ G AA W
Sbjct: 181 PALSWSDTLASYAQDYADNYDCSGTLTHS--GGPYGENLALGYD--------GPAAVDAW 230
Query: 181 YDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQSDN--GNFVIVGQYKPAGNVI 354
Y+EI +Y F +S GHF+QVVWK T G G G++VI Y PAGN
Sbjct: 231 YNEISNYDFSNPG-FSSNTGHFTQVVWKSTTQVGCGIKTCGGAWGDYVIC-SYDPAGNYE 288
Query: 355 GHFKENV 375
G + +NV
Sbjct: 289 GEYADNV 295
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 73.2 bits (178), Expect = 8e-13
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Frame = +1
Query: 7 LTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYD 186
LT D +A AQ YA +LA HS +GQYGENLA G T A + W +
Sbjct: 53 LTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAWG----SGDFLTAAKAVEMWVN 106
Query: 187 EIKDYKFGEESQINSKI-GHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 357
E + Y + ++ GH++QVVW+++ G R Q +NG +++ Y P GNVIG
Sbjct: 107 EKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYIVSCNYDPPGNVIG 164
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 73.2 bits (178), Expect = 8e-13
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +1
Query: 7 LTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYD 186
LT D +A AQ Y +LA HS +GQYGENLA G T A + W D
Sbjct: 53 LTWDNGVAAYAQNYVSQLAADCNLVHS--HGQYGENLAQG----SGDFMTAAKAVEMWVD 106
Query: 187 EIKDYKFGEESQINSKI-GHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 357
E + Y + ++ GH++QVVW+++ G R + +NG +V+ Y P GNVIG
Sbjct: 107 EKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNGGYVVSCNYDPPGNVIG 164
>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precursor (PR-1A)
Length = 168
Score = 72.0 bits (175), Expect = 2e-12
Identities = 44/118 (37%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Frame = +1
Query: 7 LTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYD 186
LT D +A AQ YA +LA HS +GQYGENLA G T A + W D
Sbjct: 53 LTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAEG----SGDFMTAAKAVEMWVD 106
Query: 187 EIKDYKFGEESQINSKI-GHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 357
E + Y + ++ GH++QVVW+++ G R Q +NG +V+ Y P GN G
Sbjct: 107 EKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYVVSCNYDPPGNYRG 164
>sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3)
Length = 881
Score = 71.6 bits (174), Expect = 2e-12
Identities = 54/155 (34%), Positives = 67/155 (43%), Gaps = 1/155 (0%)
Frame = +1
Query: 7 LTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYD 186
LT LA AQ YA++ + +HS +G YGENLA Y T A WY
Sbjct: 46 LTWSDTLATYAQNYADQYDCSGVLTHS--DGPYGENLALGY--------TDTGAVDAWYG 95
Query: 187 EIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFG-RAQSDNGNFVIVGQYKPAGNVIGHF 363
EI Y + + GHF+QVVWK T G G + N IV Y P GN +G F
Sbjct: 96 EISKYNYSNPG-FSESTGHFTQVVWKSTAEIGCGYKYCGTTWNNYIVCSYNPPGNYLGEF 154
Query: 364 KENVLSPTGPPPKREEPRIDANQNKVGTSKSSSKT 468
E V EP I + +S S+S T
Sbjct: 155 AEEV-----------EPLISTVSSSSSSSSSTSTT 178
>sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 precursor (P4)
Length = 159
Score = 71.2 bits (173), Expect = 3e-12
Identities = 46/118 (38%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Frame = +1
Query: 13 IDWD--LAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYD 186
+ WD LA AQ YA A HS + GENLA G FTG AA Q W
Sbjct: 47 MSWDANLASRAQNYANSRAGDCNLIHSGA----GENLAKG-----GGDFTGRAAVQLWVS 97
Query: 187 EIKDYKFGEESQINSKI-GHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 357
E DY + + K+ GH++QVVW+++ G GRA+ +NG + I Y P GN +G
Sbjct: 98 ERPDYNYATNQCVGGKMCGHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWVG 155
>sp|P36110|PRY2_YEAST PRY2 protein precursor (Pathogen related in Sc 2)
Length = 329
Score = 70.5 bits (171), Expect = 5e-12
Identities = 49/126 (38%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Frame = +1
Query: 7 LTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYD 186
LT LA AQ YA+ + HS G YGENLA Y + TG + WY+
Sbjct: 213 LTWSDTLATYAQNYADSYDCSGNLVHS--GGPYGENLALGYGT------TG--SVDAWYN 262
Query: 187 EIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQSDN--GNFVIVGQYKPAGNVIGH 360
EI Y + + GHF+QVVWK T G G G+++I YK AGNVIG
Sbjct: 263 EITSYDYSNPG-FSESAGHFTQVVWKGTSEVGCGLKSCGGEWGDYIICS-YKAAGNVIGE 320
Query: 361 FKENVL 378
F +NV+
Sbjct: 321 FADNVM 326
>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 precursor (PRP 1)
Length = 177
Score = 70.5 bits (171), Expect = 5e-12
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Frame = +1
Query: 19 WD--LAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYDEI 192
WD LA AQ YA + HS +G YGENLA+++ A + W DE
Sbjct: 48 WDNRLAAYAQNYANQRIGDCGMIHS--HGPYGENLAAAFPQ-----LNAAGAVKMWVDEK 100
Query: 193 KDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 357
+ Y + S + GH++QVVW+++ G R +S+NG F I Y P GN IG
Sbjct: 101 RFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARVRSNNGWFFITCNYDPPGNFIG 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,923,183
Number of Sequences: 369166
Number of extensions: 1778195
Number of successful extensions: 5801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5721
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)