Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_P22
(492 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q16891|IMMT_HUMAN Mitochondrial inner membrane protein (... 30 4.0
sp|Q8CAQ8|IMMT_MOUSE Mitochondrial inner membrane protein (... 29 5.2
sp|Q9KF53|PUR9_BACHD Bifunctional purine biosynthesis prote... 29 5.2
sp|O02491|HMEN_ANOGA Segmentation polarity homeobox protein... 29 5.2
sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B (RNA... 29 6.8
sp|Q5YNA5|TRMB_NOCFA tRNA (guanine-N(7)-)-methyltransferase... 29 6.8
sp|Q7ZT98|CRVP_OPHHA Ophanin precursor (Opharin) 29 6.8
>sp|Q16891|IMMT_HUMAN Mitochondrial inner membrane protein (Mitofilin) (p87/89)
(Proliferation-inducing gene 4 protein)
Length = 758
Score = 29.6 bits (65), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 375 HHQAIISVENENRIRSERDSTKNE--EELQPMAVALVEHSVDVV 250
HH++ I E + +I RD+ +NE +L+ A A +H DV+
Sbjct: 455 HHRSEIQAEQDRKIEEVRDAMENEMRTQLRRQAAAHTDHLRDVL 498
>sp|Q8CAQ8|IMMT_MOUSE Mitochondrial inner membrane protein (Mitofilin)
Length = 757
Score = 29.3 bits (64), Expect = 5.2
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 375 HHQAIISVENENRIRSERDSTKNE--EELQPMAVALVEHSVDVV 250
HH++ I E + ++ RD+ +NE +L+ A A +H DV+
Sbjct: 454 HHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHTDHLRDVL 497
>sp|Q9KF53|PUR9_BACHD Bifunctional purine biosynthesis protein purH [Includes:
Phosphoribosylaminoimidazolecarboxamide
formyltransferase (AICAR transformylase); IMP
cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)]
Length = 511
Score = 29.3 bits (64), Expect = 5.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 318 STKNEEELQPMAVALVEHSVDVVGQALVGSALVE 217
S N+E + P A ALVEH V++V AL E
Sbjct: 8 SVSNKEGIVPFAKALVEHEVEIVSTGGTKRALQE 41
>sp|O02491|HMEN_ANOGA Segmentation polarity homeobox protein engrailed
Length = 596
Score = 29.3 bits (64), Expect = 5.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 67 HHNLPHHTMPLHKHKQRQLPS 129
HH LPHH P H+H +Q PS
Sbjct: 100 HHQLPHH--PHHQHHPQQQPS 118
>sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B (RNA-binding motif protein 15B)
Length = 563
Score = 28.9 bits (63), Expect = 6.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 390 GYYHYHHQAIISVENENRIRSERDSTKNEEELQPM 286
G++H+HH+A S + SER+ E E +P+
Sbjct: 337 GHHHHHHEAADSSHGKKARDSERNHRTTEAEPKPL 371
>sp|Q5YNA5|TRMB_NOCFA tRNA (guanine-N(7)-)-methyltransferase
(tRNA(m7G46)-methyltransferase)
Length = 269
Score = 28.9 bits (63), Expect = 6.8
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -1
Query: 333 RSERDSTKNEEELQPMAVALVEHSVDVVGQALVGSALVEPIVAAEHSE*RQLVAATVAIA 154
R ERD N L+ AV ++EH + V +P A H + R L ATVA+
Sbjct: 128 RIERDGIDNIRLLRGDAVDVLEHMIAAESLTGVRVFFPDPWPKARHHKRRLLQPATVALI 187
Query: 153 A 151
A
Sbjct: 188 A 188
>sp|Q7ZT98|CRVP_OPHHA Ophanin precursor (Opharin)
Length = 239
Score = 28.9 bits (63), Expect = 6.8
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 14 ATSSTRWSS-CNYGSCPDYTTTYRIIQC 94
A+++ RW+S CN G PDY+ I+C
Sbjct: 64 ASNAERWASNCNLGHSPDYSRVLEGIEC 91
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,140,959
Number of Sequences: 369166
Number of extensions: 736761
Number of successful extensions: 2899
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2892
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3020232610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)