Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_P20
(800 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 511 e-145
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 510 e-144
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 510 e-144
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 509 e-144
sp|P52273|TBA_BOMMO Tubulin alpha chain 508 e-144
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 508 e-143
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 508 e-143
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 508 e-143
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 508 e-143
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 507 e-143
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 511 bits (1316), Expect = e-145
Identities = 249/265 (93%), Positives = 252/265 (95%)
Frame = +2
Query: 5 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMER 184
EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH LLMER
Sbjct: 97 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMER 156
Query: 185 LSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 364
LSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
Sbjct: 157 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 216
Query: 365 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 544
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 276
Query: 545 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 724
SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK
Sbjct: 277 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 336
Query: 725 TKRTIQFVDWCPTGFKVGINYQPPT 799
TKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPT 361
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 510 bits (1313), Expect = e-144
Identities = 249/265 (93%), Positives = 252/265 (95%)
Frame = +2
Query: 5 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMER 184
EDAANNYARGHYTIGKEIVDLVLDRIRKLAD CTGLQGFLIFH LLMER
Sbjct: 97 EDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMER 156
Query: 185 LSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 364
LSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
Sbjct: 157 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 216
Query: 365 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 544
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Query: 545 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 724
SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK
Sbjct: 277 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 336
Query: 725 TKRTIQFVDWCPTGFKVGINYQPPT 799
TKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPT 361
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 510 bits (1313), Expect = e-144
Identities = 247/265 (93%), Positives = 253/265 (95%)
Frame = +2
Query: 5 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMER 184
EDAANNYARGHYT+GKEI+DLVLDRIRKLADQCTGLQGFLIFH LLMER
Sbjct: 97 EDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMER 156
Query: 185 LSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 364
LSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
Sbjct: 157 LSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 216
Query: 365 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 544
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Query: 545 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 724
SAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLYRGDVVPKDVNAAIATIK
Sbjct: 277 SAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIK 336
Query: 725 TKRTIQFVDWCPTGFKVGINYQPPT 799
TKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPT 361
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 509 bits (1312), Expect = e-144
Identities = 246/265 (92%), Positives = 253/265 (95%)
Frame = +2
Query: 5 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMER 184
EDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH LLMER
Sbjct: 97 EDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMER 156
Query: 185 LSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 364
LSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
Sbjct: 157 LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 216
Query: 365 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 544
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Query: 545 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 724
SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIK
Sbjct: 277 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIK 336
Query: 725 TKRTIQFVDWCPTGFKVGINYQPPT 799
TKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPT 361
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 508 bits (1309), Expect = e-144
Identities = 248/265 (93%), Positives = 251/265 (94%)
Frame = +2
Query: 5 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMER 184
EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH LLMER
Sbjct: 97 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMER 156
Query: 185 LSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 364
LSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
Sbjct: 157 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 216
Query: 365 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 544
LDIE PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVI
Sbjct: 217 LDIEPPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 276
Query: 545 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 724
SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK
Sbjct: 277 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 336
Query: 725 TKRTIQFVDWCPTGFKVGINYQPPT 799
TKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPT 361
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 508 bits (1307), Expect = e-143
Identities = 245/265 (92%), Positives = 253/265 (95%)
Frame = +2
Query: 5 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMER 184
EDAANNYARGHYT+GKE++D+VLDRIRKLADQCTGLQGFLIFH LLMER
Sbjct: 97 EDAANNYARGHYTVGKELIDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMER 156
Query: 185 LSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 364
LSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
Sbjct: 157 LSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 216
Query: 365 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 544
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Query: 545 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 724
SAEKAYHEQL+V+EITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIK
Sbjct: 277 SAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIK 336
Query: 725 TKRTIQFVDWCPTGFKVGINYQPPT 799
TKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPT 361
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 508 bits (1307), Expect = e-143
Identities = 246/265 (92%), Positives = 251/265 (94%)
Frame = +2
Query: 5 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMER 184
EDAANNYARGHYTIGKEIVDLVLDR+RKL+DQCTGLQGFLIFH LLMER
Sbjct: 97 EDAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMER 156
Query: 185 LSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 364
LSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
Sbjct: 157 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 216
Query: 365 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 544
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 276
Query: 545 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 724
SAEKAYHE LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK
Sbjct: 277 SAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 336
Query: 725 TKRTIQFVDWCPTGFKVGINYQPPT 799
TKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPT 361
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 508 bits (1307), Expect = e-143
Identities = 249/265 (93%), Positives = 251/265 (94%)
Frame = +2
Query: 5 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMER 184
EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH LLMER
Sbjct: 97 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMER 156
Query: 185 LSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 364
LSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
Sbjct: 157 LSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 216
Query: 365 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 544
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 276
Query: 545 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 724
SAEKAYHEQLSVAEITNACFEPANQMVK DPRHGKYMACCMLYRGDVVPKDVNAAIATIK
Sbjct: 277 SAEKAYHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 336
Query: 725 TKRTIQFVDWCPTGFKVGINYQPPT 799
TKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPT 361
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 508 bits (1307), Expect = e-143
Identities = 245/265 (92%), Positives = 253/265 (95%)
Frame = +2
Query: 5 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMER 184
EDAANNYARGHYT+GKE++DLVLDRIRKLADQCTGLQGFLIFH LLMER
Sbjct: 97 EDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMER 156
Query: 185 LSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 364
LSVDYGKKSKLEF+VYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
Sbjct: 157 LSVDYGKKSKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 216
Query: 365 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 544
LDIERP+YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
Sbjct: 217 LDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Query: 545 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 724
SAEKAYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK
Sbjct: 277 SAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 336
Query: 725 TKRTIQFVDWCPTGFKVGINYQPPT 799
TKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPT 361
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 507 bits (1306), Expect = e-143
Identities = 247/265 (93%), Positives = 251/265 (94%)
Frame = +2
Query: 5 EDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMER 184
EDAANNYARGHYTIGKEIVD+VLDRIRKLADQCTGLQGFLIFH LLMER
Sbjct: 97 EDAANNYARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMER 156
Query: 185 LSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 364
LSVDYGKKSKLEFAVYPAPQ+ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
Sbjct: 157 LSVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN 216
Query: 365 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 544
LDIERP+YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVI
Sbjct: 217 LDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 276
Query: 545 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 724
SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIA IK
Sbjct: 277 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIANIK 336
Query: 725 TKRTIQFVDWCPTGFKVGINYQPPT 799
TKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPT 361
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,817,244
Number of Sequences: 369166
Number of extensions: 1771030
Number of successful extensions: 4692
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4600
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)