Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_P09
(357 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29401|TKT_HUMAN Transketolase (TK) 108 4e-24
sp|Q5R1W6|TKT_PANTR Transketolase (TK) 108 4e-24
sp|Q6B855|TKT_BOVIN Transketolase (TK) 108 4e-24
sp|Q60HC7|TKT_MACFA Transketolase (TK) 108 4e-24
sp|P50137|TKT_RAT Transketolase (TK) 107 6e-24
sp|P40142|TKT_MOUSE Transketolase (TK) (P68) 105 4e-23
sp|P51854|TKT2_HUMAN Transketolase-like 1 (Transketolase 2)... 94 7e-20
sp|Q58092|TKTC_METJA Putative transketolase C-terminal sect... 62 3e-10
sp|Q88QG7|DXS_PSEPK 1-deoxy-D-xylulose-5-phosphate synthase... 47 1e-05
sp|Q9KGU7|DXS_PSEAE 1-deoxy-D-xylulose-5-phosphate synthase... 47 1e-05
>sp|P29401|TKT_HUMAN Transketolase (TK)
Length = 623
Score = 108 bits (270), Expect = 4e-24
Identities = 51/94 (54%), Positives = 69/94 (73%)
Frame = +3
Query: 6 VNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAGVIVKK 185
+N+RV+D FTIKP+D +L+ A T+G +LTVEDHY EGG+GEAV+SA+ E G+ V
Sbjct: 527 INIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTH 586
Query: 186 LAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 287
LAVN VPRSG+P ELL +F ID +I A+ ++
Sbjct: 587 LAVNRVPRSGKPAELLKMFGIDRDAIAQAVRGLI 620
>sp|Q5R1W6|TKT_PANTR Transketolase (TK)
Length = 623
Score = 108 bits (270), Expect = 4e-24
Identities = 51/94 (54%), Positives = 69/94 (73%)
Frame = +3
Query: 6 VNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAGVIVKK 185
+N+RV+D FTIKP+D +L+ A T+G +LTVEDHY EGG+GEAV+SA+ E G+ V
Sbjct: 527 INIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTH 586
Query: 186 LAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 287
LAVN VPRSG+P ELL +F ID +I A+ ++
Sbjct: 587 LAVNRVPRSGKPAELLKMFGIDKDAIAQAVRGLI 620
>sp|Q6B855|TKT_BOVIN Transketolase (TK)
Length = 623
Score = 108 bits (270), Expect = 4e-24
Identities = 52/94 (55%), Positives = 70/94 (74%)
Frame = +3
Query: 6 VNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAGVIVKK 185
+N+RV+D FTIKP+D++L+ A T+G +LTVEDHY EGG+GEAV SA+ E GV V +
Sbjct: 527 INIRVLDPFTIKPLDKKLILDSARATKGRILTVEDHYYEGGIGEAVASAVVGEPGVTVTR 586
Query: 186 LAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 287
LAV+ VPRSG+P ELL +F ID +I A+ +V
Sbjct: 587 LAVSQVPRSGKPAELLKMFGIDRDAIAQAVRGLV 620
>sp|Q60HC7|TKT_MACFA Transketolase (TK)
Length = 623
Score = 108 bits (270), Expect = 4e-24
Identities = 51/94 (54%), Positives = 69/94 (73%)
Frame = +3
Query: 6 VNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAGVIVKK 185
+N+RV+D FTIKP+D +L+ A T+G +LTVEDHY EGG+GEAV+SA+ E G+ V
Sbjct: 527 INIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTH 586
Query: 186 LAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 287
LAVN VPRSG+P ELL +F ID +I A+ ++
Sbjct: 587 LAVNRVPRSGKPAELLKMFGIDKDAIAQAVKGLI 620
>sp|P50137|TKT_RAT Transketolase (TK)
Length = 623
Score = 107 bits (268), Expect = 6e-24
Identities = 51/94 (54%), Positives = 70/94 (74%)
Frame = +3
Query: 6 VNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAGVIVKK 185
+ VRV+D FTIKP+D++L+ CA T+G +LTVEDHY EGG+GEAV++ + E GV V +
Sbjct: 527 IGVRVLDPFTIKPLDKKLILDCARATKGRILTVEDHYYEGGIGEAVSAVVVGEPGVTVTR 586
Query: 186 LAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 287
LAV+ VPRSG+P ELL +F ID +I A+ +V
Sbjct: 587 LAVSQVPRSGKPAELLKMFGIDKDAIVQAVKGLV 620
>sp|P40142|TKT_MOUSE Transketolase (TK) (P68)
Length = 623
Score = 105 bits (261), Expect = 4e-23
Identities = 50/94 (53%), Positives = 70/94 (74%)
Frame = +3
Query: 6 VNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAGVIVKK 185
+++RV+D FTIKP+D +L+ A T+G +LTVEDHY EGG+GEAV++A+ E GV V +
Sbjct: 527 ISIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSAAVVGEPGVTVTR 586
Query: 186 LAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 287
LAV+ VPRSG+P ELL +F ID +I A+ +V
Sbjct: 587 LAVSQVPRSGKPAELLKMFGIDKDAIVQAVKGLV 620
>sp|P51854|TKT2_HUMAN Transketolase-like 1 (Transketolase 2) (TK 2) (Transketolase
related protein)
Length = 557
Score = 94.4 bits (233), Expect = 7e-20
Identities = 45/92 (48%), Positives = 65/92 (70%)
Frame = +3
Query: 12 VRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAGVIVKKLA 191
+RV+DLFTIKP+D + A T G ++TVEDHYP+GG+GEAV +A++ + + V LA
Sbjct: 464 IRVIDLFTIKPLDVATIVSSAKATEGRIITVEDHYPQGGIGEAVCAAVSMDPDIQVHSLA 523
Query: 192 VNGVPRSGQPEELLALFKIDASSIHDAITAMV 287
V+GVP+SG+ EELL ++ I A I A+ M+
Sbjct: 524 VSGVPQSGKSEELLDMYGISARHIIVAVKCML 555
>sp|Q58092|TKTC_METJA Putative transketolase C-terminal section (TK)
Length = 316
Score = 62.4 bits (150), Expect = 3e-10
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Frame = +3
Query: 3 GVNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAGVIVK 182
G++ +V++ TIKPIDEE+++K ++ V+TVEDH GGLG AV +AS + K
Sbjct: 221 GISAEIVEMATIKPIDEEIIKK----SKDFVVTVEDHSIIGGLGGAVAEVIASNG--LNK 274
Query: 183 KLAVNGV----PRSGQPEELLALFKIDASSI 263
KL G+ RSG+ +ELL + +D SI
Sbjct: 275 KLLRIGINDVFGRSGKADELLKYYGLDGESI 305
>sp|Q88QG7|DXS_PSEPK 1-deoxy-D-xylulose-5-phosphate synthase
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS)
Length = 631
Score = 47.4 bits (111), Expect = 1e-05
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Frame = +3
Query: 6 VNVRVVDLFTIKPIDEELLRKCA--HETRGHVLTVEDHYPEGGLGEAVTSALASEAGVIV 179
+N VVD+ +KP+DE L+ + A HE ++T+E++ GG G AV LAS+A ++
Sbjct: 532 INATVVDMRFVKPLDEALVLELAGSHEL---LVTIEENAIMGGAGAAVGEFLASQA--VL 586
Query: 180 KKLAVNGVP----RSGQPEELLALFKIDASSIHDAITA 281
K L G+P +P ++LA +DA+ I ++ A
Sbjct: 587 KPLLHLGLPDIYVEHAKPAQMLAECGLDAAGIEASVKA 624
>sp|Q9KGU7|DXS_PSEAE 1-deoxy-D-xylulose-5-phosphate synthase
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS)
Length = 627
Score = 47.0 bits (110), Expect = 1e-05
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Frame = +3
Query: 6 VNVRVVDLFTIKPIDEELLRKCA--HETRGHVLTVEDHYPEGGLGEAVTSALASEAGVIV 179
++ VVD+ +KP+DE L+R+ A HE ++T+E++ GG G AV LASE G+ V
Sbjct: 530 LDATVVDMRFVKPLDEALVRELAGSHEL---LVTIEENAVMGGAGSAVGEFLASE-GLEV 585
Query: 180 KKLAVNGVP----RSGQPEELLALFKIDASSIHDAI 275
L + G+P +P E+LA +DA+ I A+
Sbjct: 586 PLLQL-GLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,590,419
Number of Sequences: 369166
Number of extensions: 668129
Number of successful extensions: 1869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1846
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)