Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_O23
(266 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O36033|YLM1_SCHPO Hypothetical protein C19B12.01 in chro... 52 4e-07
sp|P41842|YO91_CAEEL Hypothetical protein T20B12.1 in chrom... 41 0.001
sp|Q9CYG7|OM34_MOUSE Mitochondrial import receptor subunit ... 33 0.16
sp|P14922|SSN6_YEAST Glucose repression mediator protein 32 0.46
sp|Q15785|OM34_HUMAN Mitochondrial import receptor subunit ... 32 0.60
sp|Q60591|NFAC2_MOUSE Nuclear factor of activated T-cells, ... 29 3.0
sp|P48182|ACR2_CAEEL Acetylcholine receptor, beta-type subu... 29 3.9
sp|Q99144|PEX5_YARLI Peroxisomal targeting signal receptor ... 28 5.1
sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab (ORF1ab poly... 28 5.1
sp|Q7NYL5|ISPF_CHRVO 2-C-methyl-D-erythritol 2,4-cyclodipho... 28 6.7
>sp|O36033|YLM1_SCHPO Hypothetical protein C19B12.01 in chromosome I
Length = 817
Score = 52.0 bits (123), Expect = 4e-07
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = +1
Query: 1 LSKRRSARAMLSLAQHFMFVDGDHANAARCFEASLACNSMQPTAWFTYGCCCLQLREFRK 180
LS +R A A SL +++ + GD A CF SL N + WFTYGC L+L+++
Sbjct: 515 LSCKRFAPAQRSLGKYY-YKKGDLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDA 573
Query: 181 AVDAF 195
A++AF
Sbjct: 574 AMEAF 578
>sp|P41842|YO91_CAEEL Hypothetical protein T20B12.1 in chromosome III
Length = 787
Score = 40.8 bits (94), Expect = 0.001
Identities = 24/78 (30%), Positives = 37/78 (47%)
Frame = +1
Query: 1 LSKRRSARAMLSLAQHFMFVDGDHANAARCFEASLACNSMQPTAWFTYGCCCLQLREFRK 180
LS R+ARA SL H + +D A + SL +Q WF G C +L F++
Sbjct: 461 LSDDRNARAHRSLG-HLLLMDKKFEEAYKHLRRSLELQPIQLGTWFNAGYCAWKLENFKE 519
Query: 181 AVDAFLFSTRLEADNYEA 234
+ + L+ D++EA
Sbjct: 520 STQCYHRCVSLQPDHFEA 537
>sp|Q9CYG7|OM34_MOUSE Mitochondrial import receptor subunit TOM34 (Translocase of outer
membrane 34 kDa subunit)
Length = 309
Score = 33.5 bits (75), Expect = 0.16
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 64 GDHANAARCFEASLACNSMQPTAWFTYGCCCLQLREFRKAVDAFLFSTRLEADNYEA 234
G+H A + SL C+S++ + C L L+++++AV + +L+ N +A
Sbjct: 207 GNHKKAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKA 263
>sp|P14922|SSN6_YEAST Glucose repression mediator protein
Length = 966
Score = 32.0 bits (71), Expect = 0.46
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 16 SARAMLSLAQHFMFVDGDHANAARCFEASLACNSMQPTAWFTYGCCCLQLREFRKAVDAF 195
SA+A+ SLA + D AA +E +L N W T G C L L + ++A +A+
Sbjct: 79 SAKALTSLAHLYRSRDM-FQRAAELYERALLVNPELSDVWATLGHCYLMLDDLQRAYNAY 137
>sp|Q15785|OM34_HUMAN Mitochondrial import receptor subunit TOM34 (Translocase of outer
membrane 34 kDa subunit) (hTom34)
Length = 309
Score = 31.6 bits (70), Expect = 0.60
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 64 GDHANAARCFEASLACNSMQPTAWFTYGCCCLQLREFRKAVDAFLFSTRLEADNYEA 234
G+H A + SL C++++ + C L L+++ +AV + +L+ N +A
Sbjct: 207 GNHKKAIEKYSESLLCSNLESATYSNRALCYLVLKQYTEAVKDCTEALKLDGKNVKA 263
>sp|Q60591|NFAC2_MOUSE Nuclear factor of activated T-cells, cytoplasmic 2 (T cell
transcription factor NFAT1) (NFAT pre-existing subunit)
(NF-ATp)
Length = 1064
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 253 ALAQLFQPRSYLLPVVSRTGMRRPPCETPAAAGSS 149
ALA + + LPV G R P C +PA++GSS
Sbjct: 143 ALAGVAASPRFTLPVPGYEGYREPLCLSPASSGSS 177
>sp|P48182|ACR2_CAEEL Acetylcholine receptor, beta-type subunit acr-2 precursor
Length = 575
Score = 28.9 bits (63), Expect = 3.9
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Frame = +2
Query: 29 CSAWRSTSCLSMATTRMPRA--------------ASRRPSLATRCSRQLGSLTGAAACSC 166
CS W+ + M+ R PRA + SL + S+++ + A A
Sbjct: 443 CSKWKKRLSIRMSKRRAPRARLDDDSEDIIDDTNGNHVDSLQEKISKEMKTTVEAIAYIA 502
Query: 167 GSFARRSTHSCSRHDWKQITTRLEQL 244
R + R DWK + L++L
Sbjct: 503 EHMKREMSLKKMRDDWKYVAMVLDRL 528
>sp|Q99144|PEX5_YARLI Peroxisomal targeting signal receptor (Peroxisomal protein PAY32)
(Peroxin-5) (PTS1 receptor)
Length = 598
Score = 28.5 bits (62), Expect = 5.1
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 52 MFVDGDHANAARCFEASLACNSMQPTAWFTYGCCCLQLREFRKAVDAFLFSTRLEADNYE 231
M G + AA FEA++ N+ AW G C Q + A+ A +LE N
Sbjct: 314 METGGRLSEAALAFEAAVQKNTEHAEAWGRLGACQAQNEKEDPAIRALERCIKLEPGNLS 373
Query: 232 A 234
A
Sbjct: 374 A 374
>sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes: Replicase
polyprotein 1a (ORF1a)] [Contains: Nsp1 papain-like
cysteine proteinase (PCP); Nsp2 cysteine proteinase
(CP2) (CP); Nonstructural protein 3 (Nsp3); 3C-like
serine proteinase (3.4.21.-) (3CLSP) (Nsp4);
Nonstructural protein 5-6-7 (Nsp5-6-7); Nonstructural
protein 8 (Nsp8); RNA-directed RNA polymerase (RdRp)
(Pol) (Nsp9); Helicase (Hel) (Nsp10); Nonstructural
protein 11 (Nsp11); Nonstructural protein 12 (Nsp12)]
Length = 3175
Score = 28.5 bits (62), Expect = 5.1
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +1
Query: 13 RSARAMLSLAQHFMFVDGDHANAARCFEASLACNSMQPTAWFTYGCCCLQLREFRKAVDA 192
R A L++ + +F+ DHA+A R A A + AW + + D
Sbjct: 103 RVVDARLAIEEASVFISTDHASAKRFPGARFALTPVYANAWVVSPAANSLIVTTDQEQDG 162
Query: 193 FLFSTRLEADNYEAG 237
F + L D EAG
Sbjct: 163 FCWLKLLPPDRREAG 177
>sp|Q7NYL5|ISPF_CHRVO 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
Length = 158
Score = 28.1 bits (61), Expect = 6.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 5 RNAARRVRCSAWRSTSCLSMATTRMPRAASRRPSLATRCSRQLGSLTGA 151
R AA RVR + WR + S + P+ A ++ + LG GA
Sbjct: 79 REAAARVRAAGWRPVNVDSTLIAQRPKLAPHIDAMRANIAADLGLDVGA 127
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,994,057
Number of Sequences: 369166
Number of extensions: 485255
Number of successful extensions: 1765
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1765
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)