Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_O16
(535 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JM76|ARPC3_MOUSE Actin-related protein 2/3 complex sub... 137 1e-32
sp|O15145|ARPC3_HUMAN Actin-related protein 2/3 complex sub... 136 3e-32
sp|Q9XWV3|ARPC3_CAEEL Probable actin-related protein 2/3 co... 107 2e-23
sp|Q9Y7J4|ARPC3_SCHPO ARP2/3 complex 21 kDa subunit (p21-ARC) 99 6e-21
sp|Q05933|ARPC3_YEAST ARP2/3 complex 21 kDa subunit (p21-ARC) 85 1e-16
sp|O96624|ARPC3_DICDI Actin-related protein 2/3 complex sub... 84 3e-16
sp|P32790|SLA1_YEAST Cytoskeleton assembly control protein ... 30 3.7
>sp|Q9JM76|ARPC3_MOUSE Actin-related protein 2/3 complex subunit 3 (ARP2/3 complex 21 kDa
subunit) (p21-ARC)
Length = 178
Score = 137 bits (346), Expect = 1e-32
Identities = 61/111 (54%), Positives = 81/111 (72%)
Frame = +1
Query: 7 IYITLFILECLRRLQRCTNKTQGSKELLALAMSRFDLPGDPGFpreLNALYARPKDLNEQ 186
IYITL+I ECL++LQ+C +K+QG KE+ L ++ F +PG+PGFP LNA+YA+P E
Sbjct: 69 IYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFP--LNAIYAKPASKQED 126
Query: 187 EMMKGYFLQIRQETALRLLEKVFLNDQDPPNKWWMCFARRKFMEQAFSAPG 339
EMM+ Y Q+RQET LRL EKVF D P+KWW CF +R+FM ++ S PG
Sbjct: 127 EMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMNKSLSGPG 177
>sp|O15145|ARPC3_HUMAN Actin-related protein 2/3 complex subunit 3 (ARP2/3 complex 21 kDa
subunit) (p21-ARC)
Length = 178
Score = 136 bits (343), Expect = 3e-32
Identities = 60/111 (54%), Positives = 82/111 (73%)
Frame = +1
Query: 7 IYITLFILECLRRLQRCTNKTQGSKELLALAMSRFDLPGDPGFpreLNALYARPKDLNEQ 186
IYITL+I ECL++LQ+C +K+QG KE+ L ++ F +PG+PGFP LNA+YA+P + E
Sbjct: 69 IYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFP--LNAIYAKPANKQED 126
Query: 187 EMMKGYFLQIRQETALRLLEKVFLNDQDPPNKWWMCFARRKFMEQAFSAPG 339
E+M+ Y Q+RQET LRL EKVF D P+KWW CF +R+FM ++ S PG
Sbjct: 127 EVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPG 177
>sp|Q9XWV3|ARPC3_CAEEL Probable actin-related protein 2/3 complex subunit 3 (ARP2/3
complex 21 kDa subunit) (p21-ARC)
Length = 183
Score = 107 bits (266), Expect = 2e-23
Identities = 51/112 (45%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Frame = +1
Query: 7 IYITLFILECLRRLQRCTNKTQGSKELLALAMSRF-DLPGDPGFpreLNALYARPKDLNE 183
IY+ +I ECLR+LQ+ NK G K+L ALA+S +PG+ GFP LN++Y P+ +
Sbjct: 71 IYLIFYITECLRKLQKSPNKIAGQKDLHALALSHLLPIPGENGFP--LNSMYKAPQSKPD 128
Query: 184 QEMMKGYFLQIRQETALRLLEKVFLNDQDPPNKWWMCFARRKFMEQAFSAPG 339
++ M+ Y QIRQE RL + F + QD P+KWW+CFARR+FM++ G
Sbjct: 129 EDEMRAYLQQIRQEIGARLCDLAFPDPQDRPSKWWLCFARRRFMDKGLVGQG 180
>sp|Q9Y7J4|ARPC3_SCHPO ARP2/3 complex 21 kDa subunit (p21-ARC)
Length = 174
Score = 99.0 bits (245), Expect = 6e-21
Identities = 50/106 (47%), Positives = 67/106 (63%)
Frame = +1
Query: 7 IYITLFILECLRRLQRCTNKTQGSKELLALAMSRFDLPGDPGFpreLNALYARPKDLNEQ 186
IY TLFI ECL R+ N ++L +LA+ F +PG GFP LNALYA P +
Sbjct: 71 IYGTLFISECLGRVNGL-NYRDAERQLNSLALENFSIPGSAGFP--LNALYAPPLSPQDA 127
Query: 187 EMMKGYFLQIRQETALRLLEKVFLNDQDPPNKWWMCFARRKFMEQA 324
E+M+ Y Q RQE A RLL V+ ++D P+KWW CF++R+FM +A
Sbjct: 128 EIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMNKA 173
>sp|Q05933|ARPC3_YEAST ARP2/3 complex 21 kDa subunit (p21-ARC)
Length = 178
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Frame = +1
Query: 7 IYITLFILECLRRLQRCTNKTQGSKELLALAMSRFDLPGDPGFpreLNALYARP-KDLNE 183
IY LFI +CL L+ T+ + K L +A+ F LPG PGFP LN +Y P +D N
Sbjct: 71 IYGILFINDCLAHLKITTSFNEAVKVLTNVALDNFTLPGTPGFP--LNNVYQVPVQDHNS 128
Query: 184 QEMMKGYFLQIRQETALRLLEKVF--LNDQDPPNKWWMCFARRKFMEQA 324
+++K Y Q RQE A+RLLE+V+ + ++ P+K+W+ F RR+FM ++
Sbjct: 129 MDLLKTYIQQFRQELAMRLLERVYSSTDSKEYPSKFWLAFTRRRFMNKS 177
>sp|O96624|ARPC3_DICDI Actin-related protein 2/3 complex subunit 3 (ARP2/3 complex 21 kDa
subunit) (p21-ARC)
Length = 174
Score = 83.6 bits (205), Expect = 3e-16
Identities = 39/106 (36%), Positives = 62/106 (58%)
Frame = +1
Query: 7 IYITLFILECLRRLQRCTNKTQGSKELLALAMSRFDLPGDPGFpreLNALYARPKDLNEQ 186
IY+TL+I +CL ++ NK K L +A +F +PG+ FP L L P +
Sbjct: 71 IYLTLYITKCLLKIAPM-NKADAEKALFLIAQEQFSIPGESAFP--LGGLVTVPNTRDAA 127
Query: 187 EMMKGYFLQIRQETALRLLEKVFLNDQDPPNKWWMCFARRKFMEQA 324
+ ++ YF Q+R E +RL ++V+ D NKWW+CF++RKF+ +A
Sbjct: 128 DTLRQYFTQLRLELGVRLCQRVYAVDPSKANKWWICFSKRKFLNKA 173
>sp|P32790|SLA1_YEAST Cytoskeleton assembly control protein SLA1
Length = 1244
Score = 30.0 bits (66), Expect = 3.7
Identities = 19/95 (20%), Positives = 41/95 (43%)
Frame = +1
Query: 10 YITLFILECLRRLQRCTNKTQGSKELLALAMSRFDLPGDPGFpreLNALYARPKDLNEQE 189
++ L ++ R L+ T T +E++ + DPG A ++ + + + +
Sbjct: 304 HMFLEFVDPYRSLELHTGNTTTCEEIMNIIGEYKGASRDPGLREVEMASKSKKRGIVQYD 363
Query: 190 MMKGYFLQIRQETALRLLEKVFLNDQDPPNKWWMC 294
M + + E ++ +KV++ D WWMC
Sbjct: 364 FMA----ESQDELTIKSGDKVYILDDKKSKDWWMC 394
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,435,154
Number of Sequences: 369166
Number of extensions: 1181496
Number of successful extensions: 3074
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3064
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)