Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_O14
(818 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9HDY9|YK02_SCHPO Hypothetical serine/threonine-rich pro... 35 0.25
sp|Q03924|ZN117_HUMAN Zinc finger protein 117 (Zinc finger ... 32 2.1
sp|Q96474|ALB1_LUPAN Albumin 1 precursor (A1) [Contains: Al... 32 2.1
sp|O74851|ADG3_SCHPO Protein adg3 precursor 31 4.7
sp|P10493|NIDO_MOUSE Nidogen precursor (Entactin) 30 6.1
sp|P70281|SCP3_MOUSE Synaptonemal complex protein 3 (SCP-3 ... 30 8.0
sp|Q9ZQX0|ALB1_GLYSO Albumin 1 precursor (A1) [Contains: Al... 30 8.0
>sp|Q9HDY9|YK02_SCHPO Hypothetical serine/threonine-rich protein P11E10.02c in chromosome
I precursor
Length = 1082
Score = 35.0 bits (79), Expect = 0.25
Identities = 22/71 (30%), Positives = 42/71 (59%)
Frame = -1
Query: 446 NTSKTSNQSIEINCSSQIFVSSTKSFFPNVFWTFLTIFISSVRSTNTFQSNNNIKISCNS 267
N+ +S+++ + SS V+ +S FP+ + LT S+VRST+ S++ +++ S
Sbjct: 309 NSVTSSSETTNLPSSSSSLVTIGESSFPSSLLSLLTQSFSTVRSTS---SSSTDQLTSAS 365
Query: 266 PFSSTKIASSI 234
P SS+ I+ S+
Sbjct: 366 PISSSVISPSV 376
>sp|Q03924|ZN117_HUMAN Zinc finger protein 117 (Zinc finger protein HPF9)
Length = 418
Score = 32.0 bits (71), Expect = 2.1
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +3
Query: 303 KCVRRSNTRYENCQKCPKNIRKKRFCTANKYLRTTVYFNRLVGCFRCVSDQKTSTKEIKC 482
K + RYE C++C K + T +KY+ T +L C C S+ K
Sbjct: 275 KLIHTGEKRYE-CEECGKAFNRSSKLTEHKYIHTG---EKLYKCEECDKAFNLSSTLTKH 330
Query: 483 KTRKVVKRINKTTECKTIYKR 545
K +++ K EC +K+
Sbjct: 331 KVIHTGEKLYKCKECGKAFKQ 351
>sp|Q96474|ALB1_LUPAN Albumin 1 precursor (A1) [Contains: Albumin 1 chain b (A1b)
(Leginsulin); Albumin 1 chain a (A1a)]
Length = 81
Score = 32.0 bits (71), Expect = 2.1
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 60 TDECKCGKDQVIVGNCNQITKMITVT----HYSFVRQPNGNCLKKVKRTYRPCLTCPSNH 227
+ +C+C +IVG C T + +V + + Q + C+KK + C P+N+
Sbjct: 6 SSDCRCVPITLIVGFCIHPTGLSSVAKMIDEHPNLCQSDDECMKKGSGNF--CARYPNNY 63
Query: 228 VKYGRC 245
+ YG C
Sbjct: 64 IDYGWC 69
>sp|O74851|ADG3_SCHPO Protein adg3 precursor
Length = 1131
Score = 30.8 bits (68), Expect = 4.7
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = -1
Query: 437 KTSNQSIEINCSSQ-------IFVSSTKSFFPNVFWTFLTIFISSVRSTNTFQSNNNIKI 279
+TS +I N S F SS+ S P + + ++ +SS S N+ S+ I
Sbjct: 757 ETSGYTISSNSSQNSASEPQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSS---PI 813
Query: 278 SCNSPFSSTKIASSI 234
S NS SST I SSI
Sbjct: 814 SSNSVTSSTSIISSI 828
>sp|P10493|NIDO_MOUSE Nidogen precursor (Entactin)
Length = 1245
Score = 30.4 bits (67), Expect = 6.1
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +1
Query: 658 HCHTN---CTRICIPKISHRTKVPRCPKNTVTKLCIPRQ 765
+C N CT +C+P RT RCP NT+ CI R+
Sbjct: 1209 YCSVNNGGCTHLCLPTPGSRTC--RCPDNTLGVDCIERK 1245
>sp|P70281|SCP3_MOUSE Synaptonemal complex protein 3 (SCP-3 protein)
Length = 254
Score = 30.0 bits (66), Expect = 8.0
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 626 ILQKWEIYLSNIVIQIVQESVFQKYRTEQKFLDVRKIQLLNYVFLDKELLELFIKSTE 799
+LQ+WE+ + Q E + +R +QK +I +F K++ E FIKS E
Sbjct: 150 VLQQWELDIQKFEEQ--GEKLSNLFRQQQKIFQQSRIVQSQRMFAMKQIHEQFIKSLE 205
>sp|Q9ZQX0|ALB1_GLYSO Albumin 1 precursor (A1) [Contains: Albumin 1 chain b (A1b)
(Leginsulin); Albumin 1 chain a (A1a)]
Length = 119
Score = 30.0 bits (66), Expect = 8.0
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 60 TDECKCGKDQVIVGNCNQITKMITVT----HYSFVRQPNGNCLKKVKRTYRPCLTCPSNH 227
+ +C+C + VG C T + +V + + Q + C+KK + C P+N+
Sbjct: 36 SSDCRCVPIGLFVGFCIHPTGLSSVAKMVDEHPNLCQSDDECMKKGSGNF--CARYPNNY 93
Query: 228 VKYGRC 245
+ YG C
Sbjct: 94 IDYGWC 99
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,010,230
Number of Sequences: 369166
Number of extensions: 1489429
Number of successful extensions: 3858
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3856
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)