Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_O06
(772 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O00519|FAAH_HUMAN Fatty-acid amide hydrolase (Oleamide h... 31 4.3
sp|P97612|FAAH_RAT Fatty-acid amide hydrolase (Oleamide hyd... 31 4.3
sp|O08914|FAAH_MOUSE Fatty-acid amide hydrolase (Oleamide h... 31 4.3
sp|Q8K9X7|NUOL_BUCAP NADH-quinone oxidoreductase chain L (N... 30 5.6
sp|P33334|PRP8_YEAST Pre-mRNA splicing factor PRP8 30 7.3
sp|O13988|POT1_SCHPO Protection of telomeres protein 1 30 7.3
sp|Q9ZCP8|EX7L_RICPR Probable exodeoxyribonuclease VII larg... 30 9.5
>sp|O00519|FAAH_HUMAN Fatty-acid amide hydrolase (Oleamide hydrolase) (Anandamide
amidohydrolase)
Length = 579
Score = 30.8 bits (68), Expect = 4.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 753 YKTNSGTNCTTIYNQKCTTSTTKPHFPRQNIIY 655
++ N GTNC T Y C T ++ PRQ ++Y
Sbjct: 105 WEVNKGTNCVTSYLADCETQLSQA--PRQGLLY 135
>sp|P97612|FAAH_RAT Fatty-acid amide hydrolase (Oleamide hydrolase) (Anandamide
amidohydrolase)
Length = 579
Score = 30.8 bits (68), Expect = 4.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 753 YKTNSGTNCTTIYNQKCTTSTTKPHFPRQNIIY 655
++ N GTNC T Y C T ++ PRQ ++Y
Sbjct: 105 WEVNKGTNCVTSYLTDCETQLSQA--PRQGLLY 135
>sp|O08914|FAAH_MOUSE Fatty-acid amide hydrolase (Oleamide hydrolase) (Anandamide
amidohydrolase)
Length = 579
Score = 30.8 bits (68), Expect = 4.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 753 YKTNSGTNCTTIYNQKCTTSTTKPHFPRQNIIY 655
++ N GTNC T Y C T ++ PRQ ++Y
Sbjct: 105 WEVNKGTNCVTSYLTDCETQLSQA--PRQGLLY 135
>sp|Q8K9X7|NUOL_BUCAP NADH-quinone oxidoreductase chain L (NADH dehydrogenase I, chain L)
(NDH-1, chain L)
Length = 615
Score = 30.4 bits (67), Expect = 5.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 453 YFDCFIIRLFCDNSVFIYILNNTIELFYEIHFLFVFNN 566
YF+ F+I LFC IY +F+ FVF+N
Sbjct: 411 YFNLFLIGLFCSFLTSIYTFRMIFVIFHRSSVSFVFSN 448
>sp|P33334|PRP8_YEAST Pre-mRNA splicing factor PRP8
Length = 2413
Score = 30.0 bits (66), Expect = 7.3
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Frame = +3
Query: 405 NPLKFVLFVRIKKHVKYFDCFIIRLFCDNSVFIYILNNTIELFYE--------IHFLFVF 560
NP +VL RI+K ++ + + F ++S + + NN I+LF + +H F
Sbjct: 1809 NPALYVLRERIRKGLQIYQSSVQEPFLNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEG 1868
Query: 561 NNL*KAID 584
N KAI+
Sbjct: 1869 NVATKAIN 1876
>sp|O13988|POT1_SCHPO Protection of telomeres protein 1
Length = 555
Score = 30.0 bits (66), Expect = 7.3
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -2
Query: 708 KCTTSTTKPHFPRQNIIYVQKFEIKLAILKF-NKSLTVYALQNQ 580
K TT +T H P QN++ +K +++ ++ F KSLT +A+ +Q
Sbjct: 386 KLTTISTILHAPLQNLLKPRKHRLRVQVVDFWPKSLTQFAVLSQ 429
>sp|Q9ZCP8|EX7L_RICPR Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
large subunit)
Length = 453
Score = 29.6 bits (65), Expect = 9.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 396 NTLNPLKFVLFVRIKKHVKYFDCFIIRLFCDNSVFIYILNNTIELFYEIHF 548
NT+ + +LF + +KY + I+ +S F Y +NN +L EI F
Sbjct: 277 NTIQSYEKILFNNTNRLIKYHEQSIVNYDKIHSYFSYYINNRQQLLDEIGF 327
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,750,724
Number of Sequences: 369166
Number of extensions: 1685755
Number of successful extensions: 3591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3591
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)