Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_O04
(616 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UJ70|NAGK_HUMAN N-acetylglucosamine kinase (GlcNAc kin... 101 2e-21
sp|Q9QZ08|NAGK_MOUSE N-acetylglucosamine kinase (GlcNAc kin... 98 2e-20
sp|Q6MUM4|KSGA_MYCMS Dimethyladenosine transferase (S-adeno... 30 4.9
sp|Q970U8|CARA_SULTO Carbamoyl-phosphate synthase small cha... 30 4.9
sp|P03037|RANT_BPP22 Antirepressor protein ant 29 8.4
sp|Q59968|CARA_SULSO Carbamoyl-phosphate synthase small cha... 29 8.4
>sp|Q9UJ70|NAGK_HUMAN N-acetylglucosamine kinase (GlcNAc kinase)
Length = 344
Score = 101 bits (251), Expect = 2e-21
Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 3/192 (1%)
Frame = +2
Query: 2 LLGDEGSAYGIVNGGIKKIIDAEEGRIPMETPYSVFKEILFKYLKISDIYELIPLYYHNF 181
++GDEGSAY I + +K + D+ + K+ +F Y ++ D ++ Y +F
Sbjct: 149 MMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDF 208
Query: 182 DKALIANMCPLLAQAAENGDKFCIDLFYEAGYILARLVATMARHCEPAILENPEGLPVVC 361
DK A C +A+ A+ GD +F +AG +L R + + +P + + GLP++C
Sbjct: 209 DKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILC 268
Query: 362 VGGVWGSWNLLESGFIDGLKPKYE---NDIVIKKICLKRLIVTAAYGAAIIASELGHSPI 532
VG VW SW LL+ GF+ L E + +K +A GA++ A +GH +
Sbjct: 269 VGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHL-L 327
Query: 533 KPDYSSTFCVFF 568
DYS+ F+
Sbjct: 328 PMDYSANAIAFY 339
>sp|Q9QZ08|NAGK_MOUSE N-acetylglucosamine kinase (GlcNAc kinase)
Length = 343
Score = 97.8 bits (242), Expect = 2e-20
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 4/193 (2%)
Frame = +2
Query: 2 LLGDEGSAYGIVNGGIKKIIDAEEGRIPMETPYSVFKEILFKYLKISDIYELIPLYYHNF 181
++GDEGSAY I + +K + D+ + K+ +F Y ++ D ++ Y +F
Sbjct: 149 MMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGHVKQAMFDYFQVPDRLGILTHLYRDF 208
Query: 182 DKALIANMCPLLAQAAENGDKFCIDLFYEAGYILARLVATMARHCEPAILENPEGLPVVC 361
DK A C +A+ A GD +F +AG +L R V + +P + + GLP++C
Sbjct: 209 DKCKFAGFCQKIAEGAHQGDPLSRYIFRKAGEMLGRHVVAVLPEIDPVLFQGELGLPILC 268
Query: 362 VGGVWGSWNLLESGFIDGLKPKYENDI--VIKKICLKRLIVTAAYGAAII-ASELG-HSP 529
VG VW SW LL+ GF+ L E L +L ++A G A + A +G H P
Sbjct: 269 VGSVWKSWELLKEGFLLALTLGREQQAQNSFSSFTLMKLRHSSALGGASLGARHIGYHLP 328
Query: 530 IKPDYSSTFCVFF 568
+ DYS F+
Sbjct: 329 M--DYSINAIAFY 339
>sp|Q6MUM4|KSGA_MYCMS Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
Length = 266
Score = 30.0 bits (66), Expect = 4.9
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 62 DAEEGRIPMETPYSVFKEILFKYLKISDI 148
D E+ I TPY + EILFK L+ISD+
Sbjct: 96 DYEKISIISNTPYYITSEILFKTLQISDL 124
>sp|Q970U8|CARA_SULTO Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate
synthetase glutamine chain)
Length = 372
Score = 30.0 bits (66), Expect = 4.9
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +2
Query: 356 VCVGGVWGSWNLLESGFIDGLKPKYENDIVIKKICLKRLIVTAAYGAAIIASELGHSPI- 532
V G G+ NLL+ I+ K E I I ICL + T A G + + GH I
Sbjct: 229 VVFGNGPGNPNLLQE-VIENFKELTEYKIPILGICLGHQVATLAMGGKVNKMKFGHRAIN 287
Query: 533 KP--DYSSTFC 559
KP D SS C
Sbjct: 288 KPVIDISSNKC 298
>sp|P03037|RANT_BPP22 Antirepressor protein ant
Length = 300
Score = 29.3 bits (64), Expect = 8.4
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = +2
Query: 170 YHNFDKALIANMCPLLAQAAENGDKFCIDLFYEAGYILARLVATMARHCEPAILENPEG 346
Y N +AL + P + Q N C D +E YI+ + H + P+G
Sbjct: 220 YANRSQALFRELYPAMRQIQSNYSGKCYDYGHEFSYIIGIARDVLINHTRDVDINEPDG 278
>sp|Q59968|CARA_SULSO Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate
synthetase glutamine chain)
Length = 367
Score = 29.3 bits (64), Expect = 8.4
Identities = 42/169 (24%), Positives = 69/169 (40%)
Frame = +2
Query: 26 YGIVNGGIKKIIDAEEGRIPMETPYSVFKEILFKYLKISDIYELIPLYYHNFDKALIANM 205
YG + G I ++ ++ R +E Y F K P+++ N ++
Sbjct: 135 YGTMMGIIASELEIDDPRKYLEKKYDEIDFTQFTSPKS-------PIFHPNTGDMIVVVD 187
Query: 206 CPLLAQAAENGDKFCIDLFYEAGYILARLVATMARHCEPAILENPEGLPVVCVGGVWGSW 385
C + ++G + + Y+ G+ + R+ + + I NP+G +V G G+
Sbjct: 188 CGI-----KHGILYGL---YKRGFSIVRVPCSFS--ASKIIEYNPKG--IVFSNGP-GNP 234
Query: 386 NLLESGFIDGLKPKYENDIVIKKICLKRLIVTAAYGAAIIASELGHSPI 532
NLLE+ I E I I ICL I T A G I + GH I
Sbjct: 235 NLLENQ-IKTFSELVEYKIPILGICLGHQIATLALGGKIKKMKFGHRAI 282
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,443,291
Number of Sequences: 369166
Number of extensions: 1384896
Number of successful extensions: 3460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3459
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)