Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_N13
(538 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5RE33|DP1_PONPY Polyposis locus protein 1 homolog 150 1e-36
sp|Q60870|DP1_MOUSE Polyposis locus protein 1 homolog (TB2 ... 149 4e-36
sp|Q4P0H0|YOP1_USTMA Protein YOP1 93 5e-19
sp|Q9UU91|YOP1_SCHPO Protein yop1 92 8e-19
sp|Q6CP93|YOP1_KLULA Protein YOP1 91 2e-18
sp|Q75A56|YOP1_ASHGO Protein YOP1 89 9e-18
sp|Q6BWH8|YOP1_DEBHA Protein YOP1 88 1e-17
sp|Q6NLY8|A22K_ARATH HVA22-like protein k (AtHVA22k) 87 3e-17
sp|Q10010|YSV4_CAEEL Hypothetical protein T19C3.4 in chromo... 85 1e-16
sp|Q6CE07|YOP1_YARLI Protein YOP1 85 1e-16
>sp|Q5RE33|DP1_PONPY Polyposis locus protein 1 homolog
Length = 189
Score = 150 bits (380), Expect = 1e-36
Identities = 69/137 (50%), Positives = 92/137 (67%)
Frame = +1
Query: 70 TDALSLVEAKTGVKKXXXXXXXXXXXXXXXXXXXXAQFLANFIGFLYPAYCSVKAIETKE 249
TD L+ +EAKTGV + A L N IGF YPAY S+KAIE+
Sbjct: 20 TDLLAKLEAKTGVNRSFIALGVIGLVALYLVFGYGASLLCNLIGFGYPAYISIKAIESPN 79
Query: 250 KDDDTKWLTYWVVYAAFSLMEFFTDIFLFWIPLYALLKCIFLVFCMAPTSWNGSLLIYEK 429
K+DDT+WLTYWVVY FS+ EFF+DIFL W P Y +LKC FL++CMAP+ NG+ L+Y++
Sbjct: 80 KEDDTQWLTYWVVYGVFSIAEFFSDIFLSWFPFYYMLKCGFLLWCMAPSPSNGAELLYKR 139
Query: 430 LIKPFVLRHEKRIDSAI 480
+I+PF L+HE ++DS +
Sbjct: 140 IIRPFFLKHESQVDSVV 156
>sp|Q60870|DP1_MOUSE Polyposis locus protein 1 homolog (TB2 protein homolog) (GP106)
Length = 185
Score = 149 bits (376), Expect = 4e-36
Identities = 68/137 (49%), Positives = 91/137 (66%)
Frame = +1
Query: 70 TDALSLVEAKTGVKKXXXXXXXXXXXXXXXXXXXXAQFLANFIGFLYPAYCSVKAIETKE 249
TD L+ +EAKTGV + A L N IGF YPAY S+KAIE+
Sbjct: 16 TDLLAKLEAKTGVNRSFIALGVIGLVALYLVFGYGASLLCNLIGFGYPAYISMKAIESPN 75
Query: 250 KDDDTKWLTYWVVYAAFSLMEFFTDIFLFWIPLYALLKCIFLVFCMAPTSWNGSLLIYEK 429
KDDDT+WLTYWVVY FS+ EFF+D+FL W+P Y +LKC FL++CMAP+ NG+ ++Y +
Sbjct: 76 KDDDTQWLTYWVVYGVFSIAEFFSDLFLSWLPFYYMLKCGFLLWCMAPSPANGAEMLYRR 135
Query: 430 LIKPFVLRHEKRIDSAI 480
+I+P LRHE ++DS +
Sbjct: 136 IIRPIFLRHESQVDSVV 152
>sp|Q4P0H0|YOP1_USTMA Protein YOP1
Length = 172
Score = 92.8 bits (229), Expect = 5e-19
Identities = 42/103 (40%), Positives = 67/103 (65%)
Frame = +1
Query: 175 AQFLANFIGFLYPAYCSVKAIETKEKDDDTKWLTYWVVYAAFSLMEFFTDIFLFWIPLYA 354
A FL N +GF PAY S+KA+E+ + DD +WLTYWVV+ F+ +E F +I L++IP Y
Sbjct: 61 AGFLTNLLGFFVPAYFSLKALESPQPQDDIQWLTYWVVFGLFTFLETFINIVLYYIPWYY 120
Query: 355 LLKCIFLVFCMAPTSWNGSLLIYEKLIKPFVLRHEKRIDSAIA 483
+K + +V+ M P + G+ ++Y ++I+P L +K + A A
Sbjct: 121 TIKTLAIVWLMLPQT-QGAKMVYSRIIRPVFLTTQKTVHQANA 162
>sp|Q9UU91|YOP1_SCHPO Protein yop1
Length = 182
Score = 92.0 bits (227), Expect = 8e-19
Identities = 40/101 (39%), Positives = 70/101 (69%)
Frame = +1
Query: 184 LANFIGFLYPAYCSVKAIETKEKDDDTKWLTYWVVYAAFSLMEFFTDIFLFWIPLYALLK 363
L N + F PA+ S+ AIET K DDT+WLTY++V + +++E+++ + L+++P+Y LLK
Sbjct: 59 LTNLLAFAMPAFFSINAIETTNKADDTQWLTYYLVTSFLNVIEYWSQLILYYVPVYWLLK 118
Query: 364 CIFLVFCMAPTSWNGSLLIYEKLIKPFVLRHEKRIDSAIAK 486
IFL++ P +NG+ +IY LI+P++ H RI ++++
Sbjct: 119 AIFLIWLALP-KFNGATIIYRHLIRPYITPHVIRICKSVSR 158
>sp|Q6CP93|YOP1_KLULA Protein YOP1
Length = 180
Score = 90.5 bits (223), Expect = 2e-18
Identities = 38/89 (42%), Positives = 61/89 (68%)
Frame = +1
Query: 178 QFLANFIGFLYPAYCSVKAIETKEKDDDTKWLTYWVVYAAFSLMEFFTDIFLFWIPLYAL 357
+ L+NF+GF P Y S+KA++T DDT+ LTYW+V++ S++EF++ L+W+P Y
Sbjct: 60 EILSNFVGFCIPTYYSLKALKTATSTDDTQLLTYWIVFSFLSVIEFWSKAILYWVPFYWF 119
Query: 358 LKCIFLVFCMAPTSWNGSLLIYEKLIKPF 444
K +FL++ P S+ G+ L+Y +LI PF
Sbjct: 120 FKTVFLLYIAIP-SFGGAQLVYTRLISPF 147
>sp|Q75A56|YOP1_ASHGO Protein YOP1
Length = 189
Score = 88.6 bits (218), Expect = 9e-18
Identities = 40/88 (45%), Positives = 59/88 (67%)
Frame = +1
Query: 178 QFLANFIGFLYPAYCSVKAIETKEKDDDTKWLTYWVVYAAFSLMEFFTDIFLFWIPLYAL 357
+ L+NF+GF+ P Y S+ AI+T DDT+ LTYW+V+A FS++EF++ L+W+P Y
Sbjct: 61 EILSNFLGFVLPCYYSLHAIKTTTTADDTELLTYWIVFAFFSVIEFWSKAILYWVPFYWF 120
Query: 358 LKCIFLVFCMAPTSWNGSLLIYEKLIKP 441
K IFL+F P G+ LIY ++I P
Sbjct: 121 FKTIFLIFIALP-QLGGASLIYHRVIAP 147
>sp|Q6BWH8|YOP1_DEBHA Protein YOP1
Length = 177
Score = 88.2 bits (217), Expect = 1e-17
Identities = 41/93 (44%), Positives = 60/93 (64%)
Frame = +1
Query: 178 QFLANFIGFLYPAYCSVKAIETKEKDDDTKWLTYWVVYAAFSLMEFFTDIFLFWIPLYAL 357
Q L+N G + P Y S+ A+E+ DDT+ LTYWVV+A F+++EF++ L+WIP Y L
Sbjct: 59 QLLSNIAGLVIPGYFSLLALESTTTSDDTQLLTYWVVFATFNVVEFWSKAILYWIPFYYL 118
Query: 358 LKCIFLVFCMAPTSWNGSLLIYEKLIKPFVLRH 456
K +FLV+ P S G++ +Y IKPF R+
Sbjct: 119 FKTVFLVYIGIP-STGGAVTVYNAAIKPFSRRY 150
>sp|Q6NLY8|A22K_ARATH HVA22-like protein k (AtHVA22k)
Length = 200
Score = 86.7 bits (213), Expect = 3e-17
Identities = 42/95 (44%), Positives = 58/95 (61%)
Frame = +1
Query: 196 IGFLYPAYCSVKAIETKEKDDDTKWLTYWVVYAAFSLMEFFTDIFLFWIPLYALLKCIFL 375
IG P Y + KAIE+ ++++ K L YW Y +FSL+E FTD + W PLY +K FL
Sbjct: 44 IGIGLPVYSTFKAIESGDENEQQKMLIYWAAYGSFSLVEVFTDKIISWFPLYYHVKFAFL 103
Query: 376 VFCMAPTSWNGSLLIYEKLIKPFVLRHEKRIDSAI 480
V+ PT GS IY I+PF+LRH+ R+D +
Sbjct: 104 VWLQLPTV-EGSKQIYNNQIRPFLLRHQARVDQLV 137
>sp|Q10010|YSV4_CAEEL Hypothetical protein T19C3.4 in chromosome III
Length = 229
Score = 85.1 bits (209), Expect = 1e-16
Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Frame = +1
Query: 199 GFLYPAYCSVKAIETKEKDDDTKWLTYWVVYAAFSLMEFFTDIFL-FWIPLYALLKCIFL 375
G LYPAY S KA+ TK+ + KW+ YW+V+A +S +E D+ L FW P Y LK +F+
Sbjct: 14 GTLYPAYRSYKAVRTKDTREYVKWMMYWIVFAIYSFLENLLDLVLAFWFPFYFQLKIVFI 73
Query: 376 VFCMAPTSWNGSLLIYEKLIKPFVLRHEKRIDSAI 480
+ ++P + G+ ++Y K + P + RHEK ID+ +
Sbjct: 74 FWLLSPWT-KGASILYRKWVHPTLNRHEKDIDALL 107
>sp|Q6CE07|YOP1_YARLI Protein YOP1
Length = 189
Score = 84.7 bits (208), Expect = 1e-16
Identities = 37/88 (42%), Positives = 58/88 (65%)
Frame = +1
Query: 178 QFLANFIGFLYPAYCSVKAIETKEKDDDTKWLTYWVVYAAFSLMEFFTDIFLFWIPLYAL 357
Q L+N G + P Y S+ A+ET K DDT++LTYWVV+A ++ EF++ L+W+P Y L
Sbjct: 60 QLLSNIAGLVIPGYYSLLALETPGKADDTQYLTYWVVFATLNVFEFWSKAILYWVPFYYL 119
Query: 358 LKCIFLVFCMAPTSWNGSLLIYEKLIKP 441
K FL++ P + G+ L+Y+ ++KP
Sbjct: 120 FKTAFLLYIGLP-QYGGAELVYKAIVKP 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,564,814
Number of Sequences: 369166
Number of extensions: 869247
Number of successful extensions: 1765
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1742
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)