Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_N08
(786 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23258|TBG1_HUMAN Tubulin gamma-1 chain (Gamma-1 tubulin... 348 1e-95
sp|Q9NRH3|TBG2_HUMAN Tubulin gamma-2 chain (Gamma-2 tubulin) 347 2e-95
sp|Q8VCK3|TBG2_MOUSE Tubulin gamma-2 chain (Gamma-2 tubulin) 345 6e-95
sp|P23330|TBG1_XENLA Tubulin gamma-1 chain (Gamma-1 tubulin... 343 2e-94
sp|P83888|TBG1_RAT Tubulin gamma-1 chain (Gamma-1 tubulin) ... 343 3e-94
sp|Q9GKK5|TBG1_CANFA Tubulin gamma-1 chain (Gamma-1 tubulin... 341 2e-93
sp|P42271|TBG2_DROME Tubulin gamma-2 chain (Gamma-2 tubulin) 325 7e-89
sp|P23257|TBG1_DROME Tubulin gamma-1 chain (Gamma-1 tubulin) 325 1e-88
sp|Q9Y882|TBG_SCHJP Tubulin gamma chain (Gamma tubulin) 313 3e-85
sp|P38558|TBG2_ARATH Tubulin gamma-2 chain (Gamma-2 tubulin) 312 6e-85
>sp|P23258|TBG1_HUMAN Tubulin gamma-1 chain (Gamma-1 tubulin) (Gamma-tubulin complex
component 1) (GCP-1)
Length = 451
Score = 348 bits (893), Expect = 1e-95
Identities = 176/260 (67%), Positives = 214/260 (82%), Gaps = 2/260 (0%)
Frame = +3
Query: 9 MSDVVVQPYNSVLTMRRLTENADCVVVLDNTALHRIASDRLRLDNPSFTHINQLVSTVMS 188
MSDVVVQPYNS+LT++RLT+NADCVVVLDNTAL+RIA+DRL + NPSF+ INQLVST+MS
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 189 TSTATLRYPSYMNNDLVSLISPLAPTPSLHFLMTGYTPLSIDISQSTSVRKTTVFDVMRR 368
ST TLRYP YMNNDL+ LI+ L PTP LHFLMTGYTPL+ D S + SVRKTTV DVMRR
Sbjct: 238 ASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVA-SVRKTTVLDVMRR 296
Query: 369 LLQPKNMMVSTPLHKNDSKNITHCFVSILNIIQGDVDPTEVHKSIQRLRERKLINFIPWA 548
LLQPKN+MVST + HC+++ILNIIQG+VDPT+VHKS+QR+RERKL NFIPW
Sbjct: 297 LLQPKNVMVST----GRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWG 352
Query: 549 PACPMVALSKRSPYVTTSHRVSGLMLANHTSISTLFKRTLVQYDKLKKADAFLNVFIKES 728
PA VALS++SPY+ ++HRVSGLM+ANHTSIS+LF+RT QYDKL+K +AFL F KE
Sbjct: 353 PASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKED 412
Query: 729 --SDINEEMNRSDEVIRNMI 782
D +EM+ S E+++ +I
Sbjct: 413 MFKDNFDEMDTSREIVQQLI 432
>sp|Q9NRH3|TBG2_HUMAN Tubulin gamma-2 chain (Gamma-2 tubulin)
Length = 451
Score = 347 bits (891), Expect = 2e-95
Identities = 176/260 (67%), Positives = 214/260 (82%), Gaps = 2/260 (0%)
Frame = +3
Query: 9 MSDVVVQPYNSVLTMRRLTENADCVVVLDNTALHRIASDRLRLDNPSFTHINQLVSTVMS 188
MSDVVVQPYNS+LT++RLT+NADCVVVLDNTAL+RIA+DRL + NPSF+ INQLVST+MS
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 189 TSTATLRYPSYMNNDLVSLISPLAPTPSLHFLMTGYTPLSIDISQSTSVRKTTVFDVMRR 368
ST TLRYP YMNNDL+ LI+ L PTP LHFLMTGYTPL+ D S + SVRKTTV DVMRR
Sbjct: 238 ASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVA-SVRKTTVLDVMRR 296
Query: 369 LLQPKNMMVSTPLHKNDSKNITHCFVSILNIIQGDVDPTEVHKSIQRLRERKLINFIPWA 548
LLQPKN+MVST + HC+++ILNIIQG+VDPT+VHKS+QR+RERKL NFIPW
Sbjct: 297 LLQPKNVMVST----GRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWG 352
Query: 549 PACPMVALSKRSPYVTTSHRVSGLMLANHTSISTLFKRTLVQYDKLKKADAFLNVFIKES 728
PA VALS++SPY+ ++HRVSGLM+ANHTSIS+LF+ + Q+DKL+K DAFL F KE
Sbjct: 353 PASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKED 412
Query: 729 --SDINEEMNRSDEVIRNMI 782
D +EM+RS EV++ +I
Sbjct: 413 MFKDNFDEMDRSREVVQELI 432
>sp|Q8VCK3|TBG2_MOUSE Tubulin gamma-2 chain (Gamma-2 tubulin)
Length = 451
Score = 345 bits (886), Expect = 6e-95
Identities = 177/260 (68%), Positives = 212/260 (81%), Gaps = 2/260 (0%)
Frame = +3
Query: 9 MSDVVVQPYNSVLTMRRLTENADCVVVLDNTALHRIASDRLRLDNPSFTHINQLVSTVMS 188
MSDVVVQPYNS+LT++RLT+NADCVVVLDNTAL+RIA+DRL + NPSF+ INQLVST+MS
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 189 TSTATLRYPSYMNNDLVSLISPLAPTPSLHFLMTGYTPLSIDISQSTSVRKTTVFDVMRR 368
ST TLRYP YMNNDL+ LI+ L PTP LHFLMTGYTPL+ D S + SVRKTTV DVMRR
Sbjct: 238 ASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVA-SVRKTTVLDVMRR 296
Query: 369 LLQPKNMMVSTPLHKNDSKNITHCFVSILNIIQGDVDPTEVHKSIQRLRERKLINFIPWA 548
LLQPKN+MVST + HC+++ILNIIQG+VDPT+VHKS+QR+RERKL NFIPW
Sbjct: 297 LLQPKNVMVST----GRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWG 352
Query: 549 PACPMVALSKRSPYVTTSHRVSGLMLANHTSISTLFKRTLVQYDKLKKADAFLNVFIKES 728
PA VALS++SPY+ ++HRVSGLM+ANHTSIS+LF+ + QYDKL K AFL F KE
Sbjct: 353 PASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQYDKLWKRGAFLEQFRKED 412
Query: 729 --SDINEEMNRSDEVIRNMI 782
D EEM+RS EV++ +I
Sbjct: 413 IFKDNFEEMHRSREVVQELI 432
>sp|P23330|TBG1_XENLA Tubulin gamma-1 chain (Gamma-1 tubulin) (xGAM)
Length = 451
Score = 343 bits (881), Expect = 2e-94
Identities = 173/260 (66%), Positives = 213/260 (81%), Gaps = 2/260 (0%)
Frame = +3
Query: 9 MSDVVVQPYNSVLTMRRLTENADCVVVLDNTALHRIASDRLRLDNPSFTHINQLVSTVMS 188
MS VVVQPYNS+LT++RLT+NADCVVVLDNTAL+RIA+DRL + NPSF+ INQLVST+MS
Sbjct: 178 MSHVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 189 TSTATLRYPSYMNNDLVSLISPLAPTPSLHFLMTGYTPLSIDISQSTSVRKTTVFDVMRR 368
ST TLRYP YMNNDL+ LI+ L PTP LHFLMTGYTPL+ D S + SVRKTTV DVMRR
Sbjct: 238 ASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVA-SVRKTTVLDVMRR 296
Query: 369 LLQPKNMMVSTPLHKNDSKNITHCFVSILNIIQGDVDPTEVHKSIQRLRERKLINFIPWA 548
LLQPKN+MVST + HC+++ILNIIQG+VDPT+VHKS+QR+RERKL NFIPW
Sbjct: 297 LLQPKNVMVST----GRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWG 352
Query: 549 PACPMVALSKRSPYVTTSHRVSGLMLANHTSISTLFKRTLVQYDKLKKADAFLNVFIKES 728
PA VALS++SPY+ ++HRVSGLM+ANHT+IS+LF+RT QYDKL+K +AFL F KE
Sbjct: 353 PASIQVALSRKSPYLPSAHRVSGLMMANHTNISSLFERTCRQYDKLRKREAFLEQFRKED 412
Query: 729 --SDINEEMNRSDEVIRNMI 782
D +E++ S E+++ +I
Sbjct: 413 IFKDNFDELDNSREIVQQLI 432
>sp|P83888|TBG1_RAT Tubulin gamma-1 chain (Gamma-1 tubulin) (Gamma-tubulin complex
component 1) (GCP-1)
sp|P83887|TBG1_MOUSE Tubulin gamma-1 chain (Gamma-1 tubulin) (Gamma-tubulin complex
component 1) (GCP-1)
Length = 451
Score = 343 bits (880), Expect = 3e-94
Identities = 173/260 (66%), Positives = 213/260 (81%), Gaps = 2/260 (0%)
Frame = +3
Query: 9 MSDVVVQPYNSVLTMRRLTENADCVVVLDNTALHRIASDRLRLDNPSFTHINQLVSTVMS 188
MSDVVVQPYNS+LT++RLT+NADCVVVLDNTAL+ IA+DRL + NPSF+ INQLVST+MS
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 189 TSTATLRYPSYMNNDLVSLISPLAPTPSLHFLMTGYTPLSIDISQSTSVRKTTVFDVMRR 368
ST TLRYP YMNNDL+ LI+ L PTP LHFLMTGYTPL+ D S + SVRKTTV DVMRR
Sbjct: 238 ASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVA-SVRKTTVLDVMRR 296
Query: 369 LLQPKNMMVSTPLHKNDSKNITHCFVSILNIIQGDVDPTEVHKSIQRLRERKLINFIPWA 548
LLQPKN+MVST + HC+++ILNIIQG+VDPT+VHKS+QR+RERKL NFIPW
Sbjct: 297 LLQPKNVMVST----GRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWG 352
Query: 549 PACPMVALSKRSPYVTTSHRVSGLMLANHTSISTLFKRTLVQYDKLKKADAFLNVFIKES 728
PA VALS++SPY+ ++HRVSGLM+ANHTSIS+LF+RT Q+DKL+K +AF+ F KE
Sbjct: 353 PASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQFDKLRKREAFMEQFRKED 412
Query: 729 --SDINEEMNRSDEVIRNMI 782
D +EM+ S E+++ +I
Sbjct: 413 IFKDNFDEMDTSREIVQQLI 432
>sp|Q9GKK5|TBG1_CANFA Tubulin gamma-1 chain (Gamma-1 tubulin) (Gamma-tubulin complex
component 1) (GCP-1)
Length = 451
Score = 341 bits (874), Expect = 2e-93
Identities = 173/260 (66%), Positives = 211/260 (81%), Gaps = 2/260 (0%)
Frame = +3
Query: 9 MSDVVVQPYNSVLTMRRLTENADCVVVLDNTALHRIASDRLRLDNPSFTHINQLVSTVMS 188
MSDVVVQPYNS+LT++RLT+NADCVVVLDNT L+RIA++RL + NPSF INQLVST+MS
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMS 237
Query: 189 TSTATLRYPSYMNNDLVSLISPLAPTPSLHFLMTGYTPLSIDISQSTSVRKTTVFDVMRR 368
ST TLRYP YMNNDL+ LI+ L PTP LHFLMTGYTPL+ D S + SVRKTTV DVMRR
Sbjct: 238 ASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVA-SVRKTTVLDVMRR 296
Query: 369 LLQPKNMMVSTPLHKNDSKNITHCFVSILNIIQGDVDPTEVHKSIQRLRERKLINFIPWA 548
LLQPKN+MVST + HC+++ILNIIQG+VDPT+VHKS+QR+RERKL NFIPW
Sbjct: 297 LLQPKNVMVST----GRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWG 352
Query: 549 PACPMVALSKRSPYVTTSHRVSGLMLANHTSISTLFKRTLVQYDKLKKADAFLNVFIKES 728
PA VALS++SPY+ ++HRVSGLM+ANHTSIS+LF+RT QYDKL+K +AFL F KE
Sbjct: 353 PASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKED 412
Query: 729 --SDINEEMNRSDEVIRNMI 782
+ +E++ S EV+ +I
Sbjct: 413 IFKENFDELDTSREVVHQLI 432
>sp|P42271|TBG2_DROME Tubulin gamma-2 chain (Gamma-2 tubulin)
Length = 457
Score = 325 bits (834), Expect = 7e-89
Identities = 164/240 (68%), Positives = 194/240 (80%)
Frame = +3
Query: 9 MSDVVVQPYNSVLTMRRLTENADCVVVLDNTALHRIASDRLRLDNPSFTHINQLVSTVMS 188
+SDVVVQPYNS+LT++RLT+ AD VVVLDNTAL+RIA++RL + P+FT IN LVST+MS
Sbjct: 178 ISDVVVQPYNSILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMS 237
Query: 189 TSTATLRYPSYMNNDLVSLISPLAPTPSLHFLMTGYTPLSIDISQSTSVRKTTVFDVMRR 368
ST TLRYPSYMNN+L+ L + L PTP LHFLMTGYTPL D TSVRKTTV DVMRR
Sbjct: 238 LSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRR 297
Query: 369 LLQPKNMMVSTPLHKNDSKNITHCFVSILNIIQGDVDPTEVHKSIQRLRERKLINFIPWA 548
LLQPKNMMVS K + CFVSILNIIQG+VDP++VHKS+QR+RERKL NFIPW
Sbjct: 298 LLQPKNMMVSALTDKQSRQ----CFVSILNIIQGEVDPSQVHKSLQRIRERKLANFIPWG 353
Query: 549 PACPMVALSKRSPYVTTSHRVSGLMLANHTSISTLFKRTLVQYDKLKKADAFLNVFIKES 728
PA VAL + SPYV ++H+VSGLM+ANHT IS+LFKR L QYDKL+K +AFL+ F +ES
Sbjct: 354 PASIQVALPRSSPYVQSAHKVSGLMMANHTGISSLFKRALAQYDKLRKRNAFLDNFRRES 413
>sp|P23257|TBG1_DROME Tubulin gamma-1 chain (Gamma-1 tubulin)
Length = 475
Score = 325 bits (832), Expect = 1e-88
Identities = 167/256 (65%), Positives = 200/256 (78%), Gaps = 4/256 (1%)
Frame = +3
Query: 9 MSDVVVQPYNSVLTMRRLTENADCVVVLDNTALHRIASDRLRLDNPSFTHINQLVSTVMS 188
+SDVVVQPYNS+LT++RLT AD VVVLDNTAL+RIA DRL + NPSF+ IN LVST+MS
Sbjct: 178 ISDVVVQPYNSMLTLKRLTTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMS 237
Query: 189 TSTATLRYPSYMNNDLVSLISPLAPTPSLHFLMTGYTPLSID----ISQSTSVRKTTVFD 356
ST TLRYPSYMNN+L+ L +PL PTP LHFLMTGYTPL+ D Q +VRKTTV D
Sbjct: 238 VSTTTLRYPSYMNNNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLD 297
Query: 357 VMRRLLQPKNMMVSTPLHKNDSKNITHCFVSILNIIQGDVDPTEVHKSIQRLRERKLINF 536
VMRRLLQPKNMMVST K+ HC++SILNIIQG+VDPT+VHKS+QR+R+RK+ F
Sbjct: 298 VMRRLLQPKNMMVST----GPDKSNHHCYISILNIIQGEVDPTQVHKSLQRIRDRKMAQF 353
Query: 537 IPWAPACPMVALSKRSPYVTTSHRVSGLMLANHTSISTLFKRTLVQYDKLKKADAFLNVF 716
IPW P VALS+ SPYV ++HRVSGLMLANHTSI +LF+R L QYDKL+K AFL+ F
Sbjct: 354 IPWGPTSIQVALSRSSPYVQSNHRVSGLMLANHTSICSLFERALNQYDKLRKRGAFLDQF 413
Query: 717 IKESSDINEEMNRSDE 764
+E +++N DE
Sbjct: 414 RREDI-FKDDLNELDE 428
>sp|Q9Y882|TBG_SCHJP Tubulin gamma chain (Gamma tubulin)
Length = 446
Score = 313 bits (803), Expect = 3e-85
Identities = 165/262 (62%), Positives = 199/262 (75%), Gaps = 3/262 (1%)
Frame = +3
Query: 9 MSDVVVQPYNSVLTMRRLTENADCVVVLDNTALHRIASDRLRLDNPSFTHINQLVSTVMS 188
+SDVVVQPYNS+LT++RLT NAD VVVLDN AL IA+DRL + NP+F NQLVSTVMS
Sbjct: 178 VSDVVVQPYNSLLTLKRLTLNADAVVVLDNAALAHIAADRLHIQNPTFHQQNQLVSTVMS 237
Query: 189 TSTATLRYPSYMNNDLVSLISPLAPTPSLHFLMTGYTPL-SIDISQSTSVRKTTVFDVMR 365
ST TLRYP YMNNDLVS+I+ L PTP HFL T YTP S + + ++RKTTV DVMR
Sbjct: 238 ASTTTLRYPGYMNNDLVSIIASLIPTPRCHFLSTSYTPFTSQQVEDARTIRKTTVLDVMR 297
Query: 366 RLLQPKNMMVSTPLHKNDSKNITHCFVSILNIIQGDVDPTEVHKSIQRLRERKLINFIPW 545
RLLQPKN MVS K CF+SILNIIQG+ DP +VHKS+ R+RERKL FIPW
Sbjct: 298 RLLQPKNRMVSVNPGKQS------CFISILNIIQGEADPNDVHKSLLRIRERKLATFIPW 351
Query: 546 APACPMVALSKRSPYVTTSHRVSGLMLANHTSISTLFKRTLVQYDKLKKADAFLNVFIKE 725
PA VALSK+SPY+ T+HRVSGLMLANHTSI++LFKRTL QYD+L+K +AFL+ + KE
Sbjct: 352 GPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLDQYRKE 411
Query: 726 SSDIN--EEMNRSDEVIRNMIK 785
S N +E + S EV+ ++I+
Sbjct: 412 SIFENSLDEFDNSREVVADLIR 433
>sp|P38558|TBG2_ARATH Tubulin gamma-2 chain (Gamma-2 tubulin)
Length = 474
Score = 312 bits (800), Expect = 6e-85
Identities = 161/251 (64%), Positives = 195/251 (77%)
Frame = +3
Query: 12 SDVVVQPYNSVLTMRRLTENADCVVVLDNTALHRIASDRLRLDNPSFTHINQLVSTVMST 191
SDVVVQPYNS+LT++RLT NADCVVVLDNTAL+RIA +RL L NP+F N LVSTVMS
Sbjct: 179 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSA 238
Query: 192 STATLRYPSYMNNDLVSLISPLAPTPSLHFLMTGYTPLSIDISQSTSVRKTTVFDVMRRL 371
ST TLRYP YMNNDLV L++ L PTP HFLMTGYTPL+++ Q+ +RKTTV DVMRRL
Sbjct: 239 STTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVE-RQANVIRKTTVLDVMRRL 297
Query: 372 LQPKNMMVSTPLHKNDSKNITHCFVSILNIIQGDVDPTEVHKSIQRLRERKLINFIPWAP 551
LQ KN+MVS+ ++ ++SILNIIQG+VDPT+VH+S+QR+RERKL+NFI W P
Sbjct: 298 LQTKNIMVSSYARNKEASQAK--YISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGP 355
Query: 552 ACPMVALSKRSPYVTTSHRVSGLMLANHTSISTLFKRTLVQYDKLKKADAFLNVFIKESS 731
A VALSK+SPYV TSHRVSGLMLA+HTSI LF R L QYDKL+K AFL+ + K
Sbjct: 356 ASIQVALSKKSPYVQTSHRVSGLMLASHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPM 415
Query: 732 DINEEMNRSDE 764
+ +++ DE
Sbjct: 416 FADNDLSEFDE 426
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,476,694
Number of Sequences: 369166
Number of extensions: 2107207
Number of successful extensions: 6601
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6191
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)