Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_M19
(315 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5RAP9|AT5G2_PONPY ATP synthase lipid-binding protein, m... 67 2e-11
sp|Q06055|AT5G2_HUMAN ATP synthase lipid-binding protein, m... 66 2e-11
sp|P32876|AT5G1_BOVIN ATP synthase lipid-binding protein, m... 66 3e-11
sp|Q71S46|AT5G3_RAT ATP synthase lipid-binding protein, mit... 65 6e-11
sp|Q5RFL2|AT5G3_PONPY ATP synthase lipid-binding protein, m... 65 6e-11
sp|Q06056|AT5G2_SHEEP ATP synthase lipid-binding protein, m... 64 1e-10
sp|Q06646|AT5G2_RAT ATP synthase lipid-binding protein, mit... 64 1e-10
sp|P07926|AT5G2_BOVIN ATP synthase lipid-binding protein, m... 64 1e-10
sp|P56383|AT5G2_MOUSE ATP synthase lipid-binding protein, m... 64 1e-10
sp|P56384|AT5G3_MOUSE ATP synthase lipid-binding protein, m... 64 1e-10
>sp|Q5RAP9|AT5G2_PONPY ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 66.6 bits (161), Expect = 2e-11
Identities = 39/78 (50%), Positives = 46/78 (58%)
Frame = +3
Query: 81 LSPVVSNKDCQLHTSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPG 260
L+ +VS+++ Q TSA+ DID FGSL+IGYARNP
Sbjct: 50 LTSLVSSRNFQ--TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPS 107
Query: 261 LKQQLFSYAILGFALSEA 314
LKQQLFSYAILGFALSEA
Sbjct: 108 LKQQLFSYAILGFALSEA 125
>sp|Q06055|AT5G2_HUMAN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/78 (50%), Positives = 45/78 (57%)
Frame = +3
Query: 81 LSPVVSNKDCQLHTSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPG 260
L+ +VS++ Q TSA+ DID FGSL+IGYARNP
Sbjct: 50 LTSLVSSRSFQ--TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPS 107
Query: 261 LKQQLFSYAILGFALSEA 314
LKQQLFSYAILGFALSEA
Sbjct: 108 LKQQLFSYAILGFALSEA 125
>sp|P32876|AT5G1_BOVIN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P1) (ATPase protein 9) (ATPase
subunit C)
Length = 136
Score = 65.9 bits (159), Expect = 3e-11
Identities = 42/96 (43%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Frame = +3
Query: 45 VMRTFLTK-NVQKLSPVVSNKDCQL-----HTSAVKNDIDQXXXXXXXXXXXXXXXXXXX 206
V +FL++ +Q + P S+ Q+ TS V DID
Sbjct: 25 VSASFLSRPEIQSVQPSYSSGPLQVARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGA 84
Query: 207 XXXXXFGSLVIGYARNPGLKQQLFSYAILGFALSEA 314
FGSL+IGYARNP LKQQLFSYAILGFALSEA
Sbjct: 85 GIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 120
>sp|Q71S46|AT5G3_RAT ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
sp|P48201|AT5G3_HUMAN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
Length = 142
Score = 64.7 bits (156), Expect = 6e-11
Identities = 35/68 (51%), Positives = 38/68 (55%)
Frame = +3
Query: 111 QLHTSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAI 290
+ TSA+ DID FGSL+IGYARNP LKQQLFSYAI
Sbjct: 59 EFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAI 118
Query: 291 LGFALSEA 314
LGFALSEA
Sbjct: 119 LGFALSEA 126
>sp|Q5RFL2|AT5G3_PONPY ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
Length = 142
Score = 64.7 bits (156), Expect = 6e-11
Identities = 35/68 (51%), Positives = 38/68 (55%)
Frame = +3
Query: 111 QLHTSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAI 290
+ TSA+ DID FGSL+IGYARNP LKQQLFSYAI
Sbjct: 59 EFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAI 118
Query: 291 LGFALSEA 314
LGFALSEA
Sbjct: 119 LGFALSEA 126
>sp|Q06056|AT5G2_SHEEP ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 143
Score = 63.9 bits (154), Expect = 1e-10
Identities = 35/65 (53%), Positives = 37/65 (56%)
Frame = +3
Query: 120 TSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAILGF 299
TSA+ DID FGSL+IGYARNP LKQQLFSYAILGF
Sbjct: 63 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF 122
Query: 300 ALSEA 314
ALSEA
Sbjct: 123 ALSEA 127
>sp|Q06646|AT5G2_RAT ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 63.9 bits (154), Expect = 1e-10
Identities = 35/65 (53%), Positives = 37/65 (56%)
Frame = +3
Query: 120 TSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAILGF 299
TSA+ DID FGSL+IGYARNP LKQQLFSYAILGF
Sbjct: 61 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF 120
Query: 300 ALSEA 314
ALSEA
Sbjct: 121 ALSEA 125
>sp|P07926|AT5G2_BOVIN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 143
Score = 63.9 bits (154), Expect = 1e-10
Identities = 35/65 (53%), Positives = 37/65 (56%)
Frame = +3
Query: 120 TSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAILGF 299
TSA+ DID FGSL+IGYARNP LKQQLFSYAILGF
Sbjct: 63 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF 122
Query: 300 ALSEA 314
ALSEA
Sbjct: 123 ALSEA 127
>sp|P56383|AT5G2_MOUSE ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 146
Score = 63.9 bits (154), Expect = 1e-10
Identities = 35/65 (53%), Positives = 37/65 (56%)
Frame = +3
Query: 120 TSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQLFSYAILGF 299
TSA+ DID FGSL+IGYARNP LKQQLFSYAILGF
Sbjct: 66 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF 125
Query: 300 ALSEA 314
ALSEA
Sbjct: 126 ALSEA 130
>sp|P56384|AT5G3_MOUSE ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 63.5 bits (153), Expect = 1e-10
Identities = 38/77 (49%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 99 NKDCQL-----HTSAVKNDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGL 263
N CQL TS + DID FGSL+IGYARNP L
Sbjct: 49 NGVCQLIRREFQTSVISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSL 108
Query: 264 KQQLFSYAILGFALSEA 314
KQQLFSYAILGFALSEA
Sbjct: 109 KQQLFSYAILGFALSEA 125
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,102,600
Number of Sequences: 369166
Number of extensions: 420423
Number of successful extensions: 955
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)