Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_M14
(285 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14604|ECHM_RAT Enoyl-CoA hydratase, mitochondrial precu... 137 8e-33
sp|Q58DM8|ECHM_BOVIN Enoyl-CoA hydratase, mitochondrial pre... 135 3e-32
sp|Q8BH95|ECHM_MOUSE Enoyl-CoA hydratase, mitochondrial pre... 135 4e-32
sp|P30084|ECHM_HUMAN Enoyl-CoA hydratase, mitochondrial pre... 131 5e-31
sp|Q5R646|ECHM_PONPY Enoyl-CoA hydratase, mitochondrial pre... 129 2e-30
sp|P34559|ECHM_CAEEL Probable enoyl-CoA hydratase, mitochon... 122 2e-28
sp|P64017|ECHA8_MYCBO Probable enoyl-CoA hydratase echA8 >g... 118 5e-27
sp|O07137|ECHA8_MYCLE Probable enoyl-CoA hydratase echA8 115 2e-26
sp|Q52995|ECHH_RHIME Probable enoyl-CoA hydratase 114 5e-26
sp|P76082|PAAF_ECOLI Probable enoyl-CoA hydratase paaF 111 6e-25
>sp|P14604|ECHM_RAT Enoyl-CoA hydratase, mitochondrial precursor (Short chain enoyl-CoA
hydratase) (SCEH) (Enoyl-CoA hydratase 1)
Length = 290
Score = 137 bits (345), Expect = 8e-33
Identities = 67/94 (71%), Positives = 78/94 (82%)
Frame = +3
Query: 3 GGGCELAMMCDIIYAGENAKFGQPEIKLGTIPGAGGTQRLVKALGKSRAMELVLTGDAID 182
GGGCELAMMCDIIYAGE A+FGQPEI LGTIPGAGGTQRL +A+GKS AME+VLTGD I
Sbjct: 140 GGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRIS 199
Query: 183 AKEALAHGLVSKVFPTETLLEETIKMCNRISKMS 284
A++A GLVSK+FP ETL+EE I+ +I+ S
Sbjct: 200 AQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNS 233
>sp|Q58DM8|ECHM_BOVIN Enoyl-CoA hydratase, mitochondrial precursor (Short chain enoyl-CoA
hydratase) (SCEH) (Enoyl-CoA hydratase 1)
Length = 290
Score = 135 bits (340), Expect = 3e-32
Identities = 65/94 (69%), Positives = 78/94 (82%)
Frame = +3
Query: 3 GGGCELAMMCDIIYAGENAKFGQPEIKLGTIPGAGGTQRLVKALGKSRAMELVLTGDAID 182
GGGCELAMMCDIIYAGE A+FGQPEI +GTIPGAGGTQRL +A+GKS AME+VLTGD I
Sbjct: 140 GGGCELAMMCDIIYAGEKAQFGQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRIS 199
Query: 183 AKEALAHGLVSKVFPTETLLEETIKMCNRISKMS 284
A++A GLVSK+FP ET++EE I+ +I+ S
Sbjct: 200 AQDAKQAGLVSKIFPVETVVEEAIQCAEKIASNS 233
>sp|Q8BH95|ECHM_MOUSE Enoyl-CoA hydratase, mitochondrial precursor (Short chain enoyl-CoA
hydratase) (SCEH) (Enoyl-CoA hydratase 1)
Length = 290
Score = 135 bits (339), Expect = 4e-32
Identities = 66/94 (70%), Positives = 77/94 (81%)
Frame = +3
Query: 3 GGGCELAMMCDIIYAGENAKFGQPEIKLGTIPGAGGTQRLVKALGKSRAMELVLTGDAID 182
GGGCELAMMCDIIYAGE A+FGQPEI LGTIPGAGGTQRL +A+GKS AME+VLTGD I
Sbjct: 140 GGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRIS 199
Query: 183 AKEALAHGLVSKVFPTETLLEETIKMCNRISKMS 284
A++A GLVSK+FP E L+EE I+ +I+ S
Sbjct: 200 AQDAKQAGLVSKIFPVEKLVEEAIQCAEKIASNS 233
>sp|P30084|ECHM_HUMAN Enoyl-CoA hydratase, mitochondrial precursor (Short chain enoyl-CoA
hydratase) (SCEH) (Enoyl-CoA hydratase 1)
Length = 290
Score = 131 bits (329), Expect = 5e-31
Identities = 64/94 (68%), Positives = 76/94 (80%)
Frame = +3
Query: 3 GGGCELAMMCDIIYAGENAKFGQPEIKLGTIPGAGGTQRLVKALGKSRAMELVLTGDAID 182
GGGCELAMMCDIIYAGE A+F QPEI +GTIPGAGGTQRL +A+GKS AME+VLTGD I
Sbjct: 140 GGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRIS 199
Query: 183 AKEALAHGLVSKVFPTETLLEETIKMCNRISKMS 284
A++A GLVSK+ P ETL+EE I+ +I+ S
Sbjct: 200 AQDAKQAGLVSKICPVETLVEEAIQCAEKIASNS 233
>sp|Q5R646|ECHM_PONPY Enoyl-CoA hydratase, mitochondrial precursor (Short chain enoyl-CoA
hydratase) (SCEH) (Enoyl-CoA hydratase 1)
Length = 290
Score = 129 bits (325), Expect = 2e-30
Identities = 63/94 (67%), Positives = 75/94 (79%)
Frame = +3
Query: 3 GGGCELAMMCDIIYAGENAKFGQPEIKLGTIPGAGGTQRLVKALGKSRAMELVLTGDAID 182
GGGCELAMMCDIIYAGE A+F QPEI +GTIPGAGGTQRL + +GKS AME+VLTGD I
Sbjct: 140 GGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRTVGKSLAMEMVLTGDRIS 199
Query: 183 AKEALAHGLVSKVFPTETLLEETIKMCNRISKMS 284
A++A GLVSK+ P ETL+EE I+ +I+ S
Sbjct: 200 AQDAKQAGLVSKICPVETLVEEAIQCAEKIASNS 233
>sp|P34559|ECHM_CAEEL Probable enoyl-CoA hydratase, mitochondrial
Length = 288
Score = 122 bits (307), Expect = 2e-28
Identities = 58/94 (61%), Positives = 74/94 (78%)
Frame = +3
Query: 3 GGGCELAMMCDIIYAGENAKFGQPEIKLGTIPGAGGTQRLVKALGKSRAMELVLTGDAID 182
GGG ELAMMCDIIYAGE A+FGQPEI +GTIPGAGGTQR +A GKS AME+ LTG+ +
Sbjct: 138 GGGNELAMMCDIIYAGEKARFGQPEINIGTIPGAGGTQRWARAAGKSFAMEVCLTGNHVT 197
Query: 183 AKEALAHGLVSKVFPTETLLEETIKMCNRISKMS 284
A+EA HG+VSK+FP + ++ E +K+ +I+ S
Sbjct: 198 AQEAKEHGIVSKIFPADQVVGEAVKLGEKIADQS 231
>sp|P64017|ECHA8_MYCBO Probable enoyl-CoA hydratase echA8
sp|P64016|ECHA8_MYCTU Probable enoyl-CoA hydratase echA8
Length = 257
Score = 118 bits (295), Expect = 5e-27
Identities = 56/94 (59%), Positives = 71/94 (75%)
Frame = +3
Query: 3 GGGCELAMMCDIIYAGENAKFGQPEIKLGTIPGAGGTQRLVKALGKSRAMELVLTGDAID 182
GGGCELAMMCD++ A + AKFGQPEIKLG +PG GG+QRL +A+GK++AM+L+LTG +D
Sbjct: 107 GGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMD 166
Query: 183 AKEALAHGLVSKVFPTETLLEETIKMCNRISKMS 284
A EA GLVS+V P + LL E IS+MS
Sbjct: 167 AAEAERSGLVSRVVPADDLLTEARATATTISQMS 200
>sp|O07137|ECHA8_MYCLE Probable enoyl-CoA hydratase echA8
Length = 257
Score = 115 bits (289), Expect = 2e-26
Identities = 56/94 (59%), Positives = 71/94 (75%)
Frame = +3
Query: 3 GGGCELAMMCDIIYAGENAKFGQPEIKLGTIPGAGGTQRLVKALGKSRAMELVLTGDAID 182
GGGCELAMMCD++ A + AKFGQPEIKLG +PG GG+QRL +A+GK++AM+L+LTG ID
Sbjct: 107 GGGCELAMMCDLLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTID 166
Query: 183 AKEALAHGLVSKVFPTETLLEETIKMCNRISKMS 284
A EA GLVS+V + LL E + IS+MS
Sbjct: 167 AAEAERSGLVSRVVLADDLLPEAKAVATTISQMS 200
>sp|Q52995|ECHH_RHIME Probable enoyl-CoA hydratase
Length = 257
Score = 114 bits (286), Expect = 5e-26
Identities = 56/94 (59%), Positives = 69/94 (73%)
Frame = +3
Query: 3 GGGCELAMMCDIIYAGENAKFGQPEIKLGTIPGAGGTQRLVKALGKSRAMELVLTGDAID 182
GGGCELAMMCD I A E AKFGQPEI LG IPG GG+QRL +A+GK++AM+L+LTG +D
Sbjct: 107 GGGCELAMMCDFIIASETAKFGQPEITLGVIPGMGGSQRLTRAVGKAKAMDLILTGRMMD 166
Query: 183 AKEALAHGLVSKVFPTETLLEETIKMCNRISKMS 284
A EA GLVS+V + LLEE + +I+ S
Sbjct: 167 AAEAERSGLVSRVVAPDRLLEEALGAAEKIASFS 200
>sp|P76082|PAAF_ECOLI Probable enoyl-CoA hydratase paaF
Length = 255
Score = 111 bits (277), Expect = 6e-25
Identities = 49/94 (52%), Positives = 76/94 (80%)
Frame = +3
Query: 3 GGGCELAMMCDIIYAGENAKFGQPEIKLGTIPGAGGTQRLVKALGKSRAMELVLTGDAID 182
G GCELA++CD++ AGENA+FG PEI LG +PGAGGTQRL++++GKS A ++VL+G++I
Sbjct: 105 GAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESIT 164
Query: 183 AKEALAHGLVSKVFPTETLLEETIKMCNRISKMS 284
A++A GLVS VFP++ LE +++ +++++ S
Sbjct: 165 AQQAQQAGLVSDVFPSDLTLEYALQLASKMARHS 198
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,113,602
Number of Sequences: 369166
Number of extensions: 416459
Number of successful extensions: 1277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)