Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_M12
(542 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9PJM5|RL24_CHLMU 50S ribosomal protein L24 34 0.20
sp|P28537|RL24_CHLTR 50S ribosomal protein L24 32 1.00
sp|O75592|MYCB2_HUMAN Probable ubiquitin ligase protein MYC... 32 1.00
sp|Q7TPH6|MYCB2_MOUSE Probable ubiquitin ligase protein MYC... 32 1.3
sp|Q6B2C0|MTAL2_YEAST Mating-type protein ALPHA2 (MATalpha2... 31 2.2
sp|Q7NB79|MRAW_MYCGA S-adenosyl-methyltransferase mraW 31 2.2
sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subun... 30 2.9
sp|P20646|PPAP_RAT Prostatic acid phosphatase precursor 30 2.9
sp|P46023|GR101_LYMST G-protein coupled receptor GRL101 pre... 30 4.9
sp|P49916|DNL3_HUMAN DNA ligase III (Polydeoxyribonucleotid... 29 6.5
>sp|Q9PJM5|RL24_CHLMU 50S ribosomal protein L24
Length = 111
Score = 34.3 bits (77), Expect = 0.20
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +2
Query: 50 LCLGNTIVNVAKNKPVIYGSIKDGIKETLANDGIID--KNCFMSKDIGEKTWEVNLLYSI 223
+C+G+T+ +A N G + +K+ + +GI KN S++ K +N+ +
Sbjct: 6 VCVGDTVYVLAGNDKGKQGKVLRCLKDKVVVEGINVRVKNIKRSQE-NPKGKRINIEAPL 64
Query: 224 HVTELELYSDNDPSELRISITSQTKK 301
H++ + L DN P+ L + +T + ++
Sbjct: 65 HISNVRLSIDNQPARLFVKVTEKGRE 90
>sp|P28537|RL24_CHLTR 50S ribosomal protein L24
Length = 111
Score = 32.0 bits (71), Expect = 1.00
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +2
Query: 50 LCLGNTIVNVAKNKPVIYGSIKDGIKETLANDGIID--KNCFMSKDIGEKTWEVNLLYSI 223
+C+G+T+ +A N G + +K+ + +GI KN S++ K +N+ +
Sbjct: 6 VCVGDTVYVLAGNDKGKQGKVLRCLKDKVVVEGINVRVKNIKRSQE-NPKGKRINIEAPL 64
Query: 224 HVTELELYSDNDPSELRISITSQTKK 301
H++ + L DN P+ L + + + ++
Sbjct: 65 HISNVRLSIDNQPARLFVKVREKGRE 90
>sp|O75592|MYCB2_HUMAN Probable ubiquitin ligase protein MYCBP2 (Myc binding protein 2)
(Protein associated with Myc) (Pam/highwire/rpm-1
protein)
Length = 4641
Score = 32.0 bits (71), Expect = 1.00
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +2
Query: 2 NFMILLVTGLLPILVELCLG------NTIVNV-AKNKPVIYGSIKDGIKETLANDGIIDK 160
+F I + +G + ELC+ +IV++ ++P + GS+ DG ET G DK
Sbjct: 3680 SFSISIQSGFEAMSQELCIVMCLKDLTSIVDIKTSSRPAMIGSLTDGSTETFWESGDEDK 3739
Query: 161 NCFMSKDIGEKTWEVNLLYSIHVTELELYSDNDPSELRISITSQT 295
N K +N + I+ + ++ DN +L +TS T
Sbjct: 3740 N-------KTKNITINCVKGINARYVSVHVDNS-RDLGNKVTSMT 3776
>sp|Q7TPH6|MYCB2_MOUSE Probable ubiquitin ligase protein MYCBP2 (Myc binding protein 2)
(Protein associated with Myc) (Pam/highwire/rpm-1
protein)
Length = 4711
Score = 31.6 bits (70), Expect = 1.3
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +2
Query: 2 NFMILLVTGLLPILVELCLG------NTIVNV-AKNKPVIYGSIKDGIKETLANDGIIDK 160
+F I + +G + ELC+ +IV++ ++P + GS+ DG ET G DK
Sbjct: 3750 SFSISVQSGFEAMSQELCIVMCLKDLTSIVDIKTSSRPAMIGSLTDGSTETFWESGDEDK 3809
Query: 161 NCFMSKDIGEKTWEVNLLYSIHVTELELYSDNDPSELRISITSQT 295
N K +N + I+ + ++ DN +L +TS T
Sbjct: 3810 N-------KTKNITINCVKGINARYVSVHVDNS-RDLGNKVTSMT 3846
>sp|Q6B2C0|MTAL2_YEAST Mating-type protein ALPHA2 (MATalpha2 protein) (Alpha-2 repressor)
Length = 210
Score = 30.8 bits (68), Expect = 2.2
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -3
Query: 282 IEIRNSLGSLSEYNSNSVTWIEYSKL---TSQVFSPISLLIKQFLSIIPSFANVSL 124
+E+R+ LG LS N N E KL TSQ+ + I++L+K+ SI +N L
Sbjct: 49 VELRDILGFLSRANKNRKISDEEKKLLQTTSQLTTTITVLLKEMRSIENDRSNYQL 104
>sp|Q7NB79|MRAW_MYCGA S-adenosyl-methyltransferase mraW
Length = 317
Score = 30.8 bits (68), Expect = 2.2
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +2
Query: 41 LVELCLGNTIVNVAKNKPVIYGSIKDGIKETLANDGIIDKNCFMSKDIGEKTWEVNLLYS 220
L++ + +V + KN YG IKD + +A K F K++ T EV L
Sbjct: 146 LIQNSTVSELVKIMKN----YGEIKDPYRVVVAL-----KKAFEKKELN--TLEVVELIK 194
Query: 221 IHVTELELYSDNDPSE-----LRISITSQ 292
HV + ELY++ P+ LRI++ ++
Sbjct: 195 KHVNKAELYANKHPARRYFQALRIAVNNE 223
>sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subunit A isoform 1 (V-ATPase A
subunit 1) (Vacuolar proton pump alpha subunit 1)
(V-ATPase 69 kDa subunit 1)
Length = 614
Score = 30.4 bits (67), Expect = 2.9
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Frame = +2
Query: 92 PVIYGSIKDGIKETLANDGIIDKNCFMSKDIG------EKTWE---VNLLYSIHVTELEL 244
P I GSI DGI+ L + G++ + ++ K + + WE +N+ H+T +L
Sbjct: 90 PGIMGSIFDGIQRPLRDIGVMTNSIYIPKGVNTTALSRSEMWEFNPLNVRVGSHITGGDL 149
Query: 245 YS---DNDPSELRISITSQTKKT 304
Y +N + R+ + + K T
Sbjct: 150 YGVVHENTLVKQRMIVAPRAKGT 172
>sp|P20646|PPAP_RAT Prostatic acid phosphatase precursor
Length = 381
Score = 30.4 bits (67), Expect = 2.9
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 218 SIHVTELELYSDNDPSELRISITSQTKKTKFPVAAKSCANGCKIPIKKDAE 370
S H+ +ELY DN + + + ++T+ +P+ C + C P++K AE
Sbjct: 311 SCHI--MELYQDNGGTFVEMYYRNETQNEPYPLTLPGCTHSC--PLEKFAE 357
>sp|P46023|GR101_LYMST G-protein coupled receptor GRL101 precursor
Length = 1115
Score = 29.6 bits (65), Expect = 4.9
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +2
Query: 65 TIVNVAKNKPVIYGSIKDGIKETLANDGIIDKNCFMSKDIGEKTW 199
T++N+++N+ SI +G LAN +ID + + KDIG+K +
Sbjct: 682 TVLNISRNQ---INSIDNGAFNNLANVRLIDLSGNVIKDIGQKVF 723
>sp|P49916|DNL3_HUMAN DNA ligase III (Polydeoxyribonucleotide synthase [ATP])
Length = 922
Score = 29.3 bits (64), Expect = 6.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 317 AAKSCANGCKIPIKKDAEKVQIEKTG 394
A K C NG IK D E+VQ+ K G
Sbjct: 408 AMKKCPNGMFSEIKYDGERVQVHKNG 433
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,928,270
Number of Sequences: 369166
Number of extensions: 874509
Number of successful extensions: 2608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2605
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)