Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_M11
(692 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36304|POLR_KYMVJ RNA replicase polyprotein 32 1.6
sp|O43918|AIRE_HUMAN Autoimmune regulator (Autoimmune polye... 32 1.6
sp|P36335|NCA12_XENLA Neural cell adhesion molecule 1-B pre... 31 2.7
sp|P16170|NCA11_XENLA Neural cell adhesion molecule 1-A pre... 31 3.5
sp|Q8VD58|EVI2B_MOUSE EVI2B protein precursor (Ecotropic vi... 30 7.9
sp|P13055|E75BB_DROME Ecdysone-induced protein 75B isoform ... 30 7.9
sp|P33424|POLN_HEVPA Non-structural polyprotein (RNA-direct... 30 7.9
>sp|P36304|POLR_KYMVJ RNA replicase polyprotein
Length = 1874
Score = 32.0 bits (71), Expect = 1.6
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = +1
Query: 88 NSPFIKRSAVNSSAIPPPQLPPTGRTNQKNLATFLQNPSAAASVEARLLNNP------IS 249
+SPF+ +N SA+PPPQ PT T + L P V++ L+ +P +S
Sbjct: 722 HSPFLSDGQLNYSALPPPQ-DPTNTT-----LSLLPEPKPPTEVQSPLMADPTCVGPAVS 775
Query: 250 QNFSQPDQMMTSTAS 294
+ P +TAS
Sbjct: 776 FSSLYPRDFFPNTAS 790
>sp|O43918|AIRE_HUMAN Autoimmune regulator (Autoimmune polyendocrinopathy candidiasis
ectodermal dystrophy protein) (APECED protein)
Length = 545
Score = 32.0 bits (71), Expect = 1.6
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +1
Query: 103 KRSAVNSSAIPPPQLPPTGRTNQKNLATFLQNPSAAASVEARLLNNPISQNFSQPDQMMT 282
K AV + +PPP+LP + +++ A +A A++ R +P SQ ++P +
Sbjct: 114 KPPAVPKALVPPPRLPTKRKASEEARA------AAPAALTPRGTASPGSQLKAKPPKKPE 167
Query: 283 STASQIRVQINN 318
S+A Q R+ + N
Sbjct: 168 SSAEQQRLPLGN 179
>sp|P36335|NCA12_XENLA Neural cell adhesion molecule 1-B precursor
Length = 1092
Score = 31.2 bits (69), Expect = 2.7
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +1
Query: 37 LENVTPATTKS-----LFPFCYNSPFIKRSAVNSSAIPPPQLPPTGRTNQKNLAT 186
L +VT TT S F NSP + + + SS PPP P T Q AT
Sbjct: 816 LPSVTTVTTNSDTITETFATAQNSPTSETTTLTSSTAPPPSTAPDSNTVQSVQAT 870
>sp|P16170|NCA11_XENLA Neural cell adhesion molecule 1-A precursor
Length = 1088
Score = 30.8 bits (68), Expect = 3.5
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +1
Query: 37 LENVTPATTKS-----LFPFCYNSPFIKRSAVNSSAIPPPQLPPTGRTNQKNLAT 186
L +VT TT S F NSP + + + SS PPP P T Q AT
Sbjct: 812 LPSVTTVTTNSDTITETFATAQNSPTSETTTLTSSTAPPPTTAPDSNTIQSIQAT 866
>sp|Q8VD58|EVI2B_MOUSE EVI2B protein precursor (Ecotropic viral integration site 2B
protein)
Length = 444
Score = 29.6 bits (65), Expect = 7.9
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 40 ENVTPATTKSLFPFCYNSPFIKRSAVNSSAIPPPQLPPTG--RTNQKNLATF 189
E TPA S P YN SAVN+S PQ P+G TNQ + +T+
Sbjct: 78 EQATPAVYVSSSPLTYNITRQAESAVNNSL---PQTSPSGFTLTNQPSPSTY 126
>sp|P13055|E75BB_DROME Ecdysone-induced protein 75B isoform B (E75-C)
Length = 1412
Score = 29.6 bits (65), Expect = 7.9
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 133 PPPQLPPTGRTNQKNLATFLQNPSAAA-----SVEARLLNNPISQNFSQPDQ 273
PPP PP + Q+ ++T + P+AAA S R +N S +F Q Q
Sbjct: 276 PPPPPPPPQQQQQQYISTGVPPPTAAARKFVVSTSTRHVNVIASNHFQQQQQ 327
>sp|P33424|POLN_HEVPA Non-structural polyprotein (RNA-directed RNA polymerase/Helicase)
Length = 1693
Score = 29.6 bits (65), Expect = 7.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 64 KSLFPFCYNSPFIKRSAVNSSAIPPPQLPPTGRTNQKNLATFLQNPSAAA 213
+S PFC S R+ A+P P P G T++ ++ + P+ AA
Sbjct: 689 ESANPFCGESTLYTRTWSEVDAVPSPAQPDLGFTSEPSIPSRAATPTPAA 738
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,393,830
Number of Sequences: 369166
Number of extensions: 1058688
Number of successful extensions: 3101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3097
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)