Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_M05
(389 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BW30|CG38_HUMAN Protein CGI-38 57 1e-08
sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog 55 4e-08
sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting prote... 52 4e-07
sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting prote... 51 9e-07
sp|O94811|P25A_HUMAN Tubulin polymerization-promoting prote... 50 1e-06
sp|P59282|P25B_HUMAN Protein p25-beta 48 8e-06
sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893 43 3e-04
sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromo... 41 7e-04
sp|Q4L5U2|TRMD_STAHJ tRNA (Guanine-N(1)-)-methyltransferase... 33 0.26
sp|P16342|R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF... 32 0.58
>sp|Q9BW30|CG38_HUMAN Protein CGI-38
Length = 176
Score = 57.4 bits (137), Expect = 1e-08
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Frame = +3
Query: 54 KTLKKICTDCKIYC-KGFDQNRCDIQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARN 230
K K+C DCK+ K DI F K G + + ++Y +F + +E + +
Sbjct: 33 KNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKSARVINYEEFKKALEELATKRFKGKSK 92
Query: 231 LAYEDAVQELKTKICQGSPAGHGTTGVSADAATARLTDVKGYTGAHKERFD 383
DA+ +L + PA G T A RLTD YTG+HKERFD
Sbjct: 93 EEAFDAICQL---VAGKEPANVGVTKAKTGGAVDRLTDTSRYTGSHKERFD 140
>sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog
Length = 176
Score = 55.5 bits (132), Expect = 4e-08
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +3
Query: 54 KTLKKICTDCKIYC-KGFDQNRCDIQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARN 230
K K+C DCK+ K DI F K + + ++Y +F + +E + +
Sbjct: 33 KNWAKLCKDCKVADGKAVTGTDVDIVFSKVKAKSARVINYEEFKKALEELATKRFKGKSK 92
Query: 231 LAYEDAVQELKTKICQGSPAGHGTTGVSADAATARLTDVKGYTGAHKERFD 383
DA+ +L I PA G T A RLTD YTG+HKERFD
Sbjct: 93 EEAFDAICQL---IAGKEPANIGVTKAKTGGAVDRLTDTSKYTGSHKERFD 140
>sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting protein (TPPP)
Length = 218
Score = 52.0 bits (123), Expect = 4e-07
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Frame = +3
Query: 33 GSTTCTDKTL-----KKICTDCKIYC-KGFDQNRCDIQFRKHIGNAKKDVDYNDFVRFVE 194
G T T K + K+C DC + K DI F K G + + + + F +E
Sbjct: 61 GDTRATGKEMHGKNWSKLCKDCHVIDGKNVTVTDVDIVFSKIKGKSCRTITFEQFQEALE 120
Query: 195 GPMAEAYMSARNLAYEDAVQELKTKICQGSPAGHGTTGVSADAATARLTDVKGYTGAHKE 374
+ + ++ + E+AV+E+ I +P G T + +RLTD +TG+HKE
Sbjct: 121 ELAKKRF---KDKSSEEAVREVHRLIEGRAPVISGVTKAVSSPTVSRLTDTSKFTGSHKE 177
Query: 375 RFD 383
RFD
Sbjct: 178 RFD 180
>sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha)
Length = 218
Score = 50.8 bits (120), Expect = 9e-07
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +3
Query: 54 KTLKKICTDCKIYC-KGFDQNRCDIQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARN 230
K K+C DC++ + DI F K G + + + + F +E + + ++
Sbjct: 73 KNWSKLCRDCQVIDGRSVTVTDVDIVFSKIKGKSCRTITFEQFKEALEELAKKRF---KD 129
Query: 231 LAYEDAVQELKTKICQGSPAGHGTTGVSADAATARLTDVKGYTGAHKERFD 383
+ E+AV+E+ I +P G T + +RLTD +TG+HKERFD
Sbjct: 130 KSAEEAVREVHKLIEGKAPIISGVTKAISSPTVSRLTDTSKFTGSHKERFD 180
>sp|O94811|P25A_HUMAN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha) (p24) (p25)
Length = 219
Score = 50.4 bits (119), Expect = 1e-06
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +3
Query: 54 KTLKKICTDCKIYC-KGFDQNRCDIQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARN 230
K K+C DC++ + DI F K G + + + + F +E + + ++
Sbjct: 74 KNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRF---KD 130
Query: 231 LAYEDAVQELKTKICQGSPAGHGTTGVSADAATARLTDVKGYTGAHKERFD 383
+ E+AV+E+ I +P G T + +RLTD +TG+HKERFD
Sbjct: 131 KSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFD 181
>sp|P59282|P25B_HUMAN Protein p25-beta
Length = 170
Score = 47.8 bits (112), Expect = 8e-06
Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Frame = +3
Query: 3 FAAFCDAVKKGSTTCTDKTLKKICTDCKIYC-KGFDQNRCDIQFRKHIGNAKKDVDYNDF 179
FAAF ++ G T +K K+C DC I K DI F K + + + F
Sbjct: 12 FAAFGESSSSG-TEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTITFQQF 70
Query: 180 VRFVEGPMAEAYMSARNLAYEDAVQELKTKICQGS-PAGHGTTGVSADAATARLTDVKGY 356
V+ + + ++ D V E + +G PA G T + A RLTD Y
Sbjct: 71 KEAVK-ELGQKRFKGKS---PDEVLENIYGLMEGKDPATTGATKATTVGAVDRLTDTSKY 126
Query: 357 TGAHKERFD 383
TG HKE FD
Sbjct: 127 TGTHKELFD 135
>sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893
Length = 192
Score = 42.7 bits (99), Expect = 3e-04
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Frame = +3
Query: 3 FAAFCDAVKKG---STTCTDKTLKKICTDCKIYCKGFDQNRCDIQFRKHIGNAKKDVDYN 173
F+ F D+ G + + +DK +K+ K+ K I F+K DYN
Sbjct: 44 FSKFGDSKSDGKLITLSQSDKWMKQ----AKVIDKKITTTDTGIHFKKFKAMKISLSDYN 99
Query: 174 DFVRFVEGPMAEAYMSARNLAYEDAVQELKTKICQ-GSPAGHGTTGVSADAATARLTDVK 350
F+ + A+ E + E+K K+ G+P + A AA RLTD
Sbjct: 100 KFLDDL----------AKTKKVE--LSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTS 147
Query: 351 GYTGAHKERFDA 386
YTG+HKERFDA
Sbjct: 148 KYTGSHKERFDA 159
>sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromosome I
Length = 180
Score = 41.2 bits (95), Expect = 7e-04
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = +3
Query: 243 DAVQELKTKICQGSPAGHGTTGVSADAATARLTDVKGYTGAHKERFDAE 389
DA+ E K+ +P+ G +A +RLTD YTGAHKERFDAE
Sbjct: 100 DAITEKLAKL--EAPSVGGAAKANAAGVYSRLTDHTKYTGAHKERFDAE 146
>sp|Q4L5U2|TRMD_STAHJ tRNA (Guanine-N(1)-)-methyltransferase (M1G-methyltransferase)
(tRNA [GM37] methyltransferase)
Length = 245
Score = 32.7 bits (73), Expect = 0.26
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 345 HLSNEQLPHQQKL-RLYHGRQDYLDRF*FSILVLRLHKPNFLHSYKLQ 205
H + EQ H+QKL R YH R D LDR+ L F+ SYK Q
Sbjct: 199 HANIEQWRHEQKLIRTYHKRPDLLDRY-----PLTEDDEKFIESYKKQ 241
>sp|P16342|R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7176
Score = 31.6 bits (70), Expect = 0.58
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 326 CRISRNSGCTMAGRTTLTDFSFQFLYCVFISQISCTHISFSHWSF 192
CR++ + C M+GR +LT S+Q C + ++ + + +SF
Sbjct: 3392 CRVTSSDFCVMSGRMSLTVMSYQMQGCQLVLTVTLQNPNTPKYSF 3436
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,910,422
Number of Sequences: 369166
Number of extensions: 809979
Number of successful extensions: 2932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2931
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)