Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_L24
(537 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06198|MYSP_SCHMA Paramyosin 144 2e-34
sp|Q05870|MYSP_SCHJA Paramyosin (Antigen Sj97) 144 2e-34
sp|P35417|MYSP_ECHGR Paramyosin 135 6e-32
sp|Q8T305|MYSP_TAESA Paramyosin 135 6e-32
sp|P35418|MYSP_TAESO Paramyosin (Antigen B) (AgB) 135 6e-32
sp|O96064|MYSP_MYTGA Paramyosin 89 9e-18
sp|P02565|MYH3_CHICK Myosin heavy chain, fast skeletal musc... 84 3e-16
sp|P13538|MYSS_CHICK Myosin heavy chain, skeletal muscle, a... 81 1e-15
sp|P05661|MYSA_DROME Myosin heavy chain, muscle 81 1e-15
sp|P12847|MYH3_RAT Myosin heavy chain, fast skeletal muscle... 80 2e-15
>sp|P06198|MYSP_SCHMA Paramyosin
Length = 866
Score = 144 bits (362), Expect = 2e-34
Identities = 78/107 (72%), Positives = 91/107 (85%)
Frame = +1
Query: 1 KELQQQADDDRRMVVELQDLLDKTQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAE 180
KELQ QA+DDRRMV+ELQDLLDKTQ+KM+AYKRQLEE+E+VS + MNKYRKAQQQIE+AE
Sbjct: 765 KELQTQAEDDRRMVLELQDLLDKTQMKMKAYKRQLEEMEEVSQITMNKYRKAQQQIEEAE 824
Query: 181 HRADMAERHLTVRRAGSVMPGSTYRAISVVRETSTVNTSRGARATSI 321
HRADMAER +TVRR G PG RA+SV RE S V ++RG RATS+
Sbjct: 825 HRADMAERTVTVRRVG---PGG--RAVSVARELS-VTSNRGMRATSM 865
>sp|Q05870|MYSP_SCHJA Paramyosin (Antigen Sj97)
Length = 866
Score = 144 bits (362), Expect = 2e-34
Identities = 78/107 (72%), Positives = 91/107 (85%)
Frame = +1
Query: 1 KELQQQADDDRRMVVELQDLLDKTQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAE 180
KELQ QA+DDRRMV+ELQDLLDKTQ+KM+AYKRQLEE+E+VS + MNKYRKAQQQIE+AE
Sbjct: 765 KELQTQAEDDRRMVLELQDLLDKTQMKMKAYKRQLEEMEEVSQITMNKYRKAQQQIEEAE 824
Query: 181 HRADMAERHLTVRRAGSVMPGSTYRAISVVRETSTVNTSRGARATSI 321
HRADMAER +TVRR G PG RA+SV RE S V ++RG RATS+
Sbjct: 825 HRADMAERTVTVRRVG---PGG--RAVSVARELS-VTSNRGMRATSM 865
>sp|P35417|MYSP_ECHGR Paramyosin
Length = 863
Score = 135 bits (340), Expect = 6e-32
Identities = 72/107 (67%), Positives = 90/107 (84%)
Frame = +1
Query: 1 KELQQQADDDRRMVVELQDLLDKTQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAE 180
KELQ Q++DD+RM++ELQDLLDKTQ+KM+AYKRQLEE E+VS + M+KYRKAQQQIE+AE
Sbjct: 761 KELQTQSEDDKRMILELQDLLDKTQIKMKAYKRQLEEQEEVSQLTMSKYRKAQQQIEEAE 820
Query: 181 HRADMAERHLTVRRAGSVMPGSTYRAISVVRETSTVNTSRGARATSI 321
HRADMAER +T++R + G RA+SVVRE ++V SRG RATSI
Sbjct: 821 HRADMAERTITIKR---TIGGPGSRAVSVVREINSV--SRGNRATSI 862
>sp|Q8T305|MYSP_TAESA Paramyosin
Length = 863
Score = 135 bits (340), Expect = 6e-32
Identities = 72/107 (67%), Positives = 90/107 (84%)
Frame = +1
Query: 1 KELQQQADDDRRMVVELQDLLDKTQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAE 180
KELQ Q++DD+RM++ELQDLLDKTQ+KM+AYKRQLEE E+VS + M+KYRKAQQQIE+AE
Sbjct: 761 KELQTQSEDDKRMILELQDLLDKTQIKMKAYKRQLEEQEEVSQLTMSKYRKAQQQIEEAE 820
Query: 181 HRADMAERHLTVRRAGSVMPGSTYRAISVVRETSTVNTSRGARATSI 321
HRADMAER +T++R + G RA+SVVRE ++V SRG RATSI
Sbjct: 821 HRADMAERTITIKR---TIGGPGSRAVSVVREINSV--SRGNRATSI 862
>sp|P35418|MYSP_TAESO Paramyosin (Antigen B) (AgB)
Length = 863
Score = 135 bits (340), Expect = 6e-32
Identities = 72/107 (67%), Positives = 90/107 (84%)
Frame = +1
Query: 1 KELQQQADDDRRMVVELQDLLDKTQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAE 180
KELQ Q++DD+RM++ELQDLLDKTQ+KM+AYKRQLEE E+VS + M+KYRKAQQQIE+AE
Sbjct: 761 KELQTQSEDDKRMILELQDLLDKTQIKMKAYKRQLEEQEEVSQLTMSKYRKAQQQIEEAE 820
Query: 181 HRADMAERHLTVRRAGSVMPGSTYRAISVVRETSTVNTSRGARATSI 321
HRADMAER +T++R + G RA+SVVRE ++V SRG RATSI
Sbjct: 821 HRADMAERTITIKR---TIGGPGSRAVSVVREINSV--SRGNRATSI 862
>sp|O96064|MYSP_MYTGA Paramyosin
Length = 864
Score = 88.6 bits (218), Expect = 9e-18
Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Frame = +1
Query: 1 KELQQQADDDRRMVVELQDLLDKTQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAE 180
KE Q +D+DRR V EL + D+ +K + YKR +EE EDV+++ MNKYRKAQ I++AE
Sbjct: 774 KETVQASDEDRRQVAELTSITDQLTMKCKTYKRMIEEAEDVASITMNKYRKAQSLIDEAE 833
Query: 181 HRADMAERHL-TVRRAGSVMPGSTYRAISVVRETSTV 288
RADMAE++L TVRR+ R++SV RE + V
Sbjct: 834 QRADMAEKNLQTVRRS---------RSMSVSREVTRV 861
Score = 30.0 bits (66), Expect = 3.7
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +1
Query: 34 RMVVELQDLLDKTQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAEHRADMAER 204
+ + LQ+ + +L++ RQL++ + +V+ K QQ++EDA + AER
Sbjct: 567 KQIKSLQNRNRELELQLEEATRQLDDTRNQLSVSERKRITIQQELEDARSLLEHAER 623
>sp|P02565|MYH3_CHICK Myosin heavy chain, fast skeletal muscle, embryonic
Length = 1940
Score = 83.6 bits (205), Expect = 3e-16
Identities = 39/77 (50%), Positives = 59/77 (76%)
Frame = +1
Query: 1 KELQQQADDDRRMVVELQDLLDKTQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAE 180
KEL Q+++DR+ V+ LQDL+DK Q+K+++YKRQ EE E++S V ++K+RK Q ++E+AE
Sbjct: 1853 KELTYQSEEDRKNVLRLQDLVDKLQMKVKSYKRQAEEAEELSNVNLSKFRKIQHELEEAE 1912
Query: 181 HRADMAERHLTVRRAGS 231
RAD+AE + RA S
Sbjct: 1913 ERADIAESQVNKLRAKS 1929
>sp|P13538|MYSS_CHICK Myosin heavy chain, skeletal muscle, adult
Length = 1939
Score = 81.3 bits (199), Expect = 1e-15
Identities = 37/77 (48%), Positives = 57/77 (74%)
Frame = +1
Query: 1 KELQQQADDDRRMVVELQDLLDKTQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAE 180
KEL Q ++DR+ ++ LQDL+DK Q+K+++YKRQ EE E++S V ++K+RK Q ++E+AE
Sbjct: 1851 KELTYQCEEDRKNILRLQDLVDKLQMKVKSYKRQAEEAEELSNVNLSKFRKIQHELEEAE 1910
Query: 181 HRADMAERHLTVRRAGS 231
RAD+AE + R S
Sbjct: 1911 ERADIAESQVNKLRVKS 1927
>sp|P05661|MYSA_DROME Myosin heavy chain, muscle
Length = 1962
Score = 81.3 bits (199), Expect = 1e-15
Identities = 47/108 (43%), Positives = 70/108 (64%)
Frame = +1
Query: 1 KELQQQADDDRRMVVELQDLLDKTQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAE 180
KEL Q+++DR+ +QDL+DK Q K++ YKRQ+EE E+++ + + K+RKAQQ++E+AE
Sbjct: 1847 KELSFQSEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAE 1906
Query: 181 HRADMAERHLTVRRAGSVMPGSTYRAISVVRETSTVNTSRGARATSIR 324
RAD+AE+ ++ RA RA SV R S RATS+R
Sbjct: 1907 ERADLAEQAISKFRAKG-------RAGSVGR-----GASPAPRATSVR 1942
>sp|P12847|MYH3_RAT Myosin heavy chain, fast skeletal muscle, embryonic
Length = 1940
Score = 80.5 bits (197), Expect = 2e-15
Identities = 37/75 (49%), Positives = 57/75 (76%)
Frame = +1
Query: 1 KELQQQADDDRRMVVELQDLLDKTQLKMRAYKRQLEEIEDVSTVAMNKYRKAQQQIEDAE 180
KEL Q+++DR+ V+ LQDL+DK Q+K+++YKRQ EE ++ + V + K+RKAQ ++E+AE
Sbjct: 1849 KELTYQSEEDRKNVLRLQDLVDKLQVKVKSYKRQAEEADEQANVHLTKFRKAQHELEEAE 1908
Query: 181 HRADMAERHLTVRRA 225
RAD+AE + RA
Sbjct: 1909 ERADIAESQVNKLRA 1923
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,495,532
Number of Sequences: 369166
Number of extensions: 740373
Number of successful extensions: 2447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2437
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)