Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_L23
(702 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DCK3|TSN4_MOUSE Tetraspanin-4 (Tspan-4) (Transmembrane... 31 3.6
sp|Q8BJU2|TSN9_MOUSE Tetraspanin-9 (Tspan-9) (Tetraspan NET-5) 30 4.7
sp|O75954|TSN9_HUMAN Tetraspanin-9 (Tspan-9) (Tetraspan NET-5) 30 4.7
sp|O95859|TSN12_HUMAN Tetraspanin-12 (Tspan-12) (Transmembr... 30 4.7
sp|Q05034|OPA67_NEIGO Opacity protein opA67 precursor 30 6.2
>sp|Q9DCK3|TSN4_MOUSE Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily member 7)
Length = 238
Score = 30.8 bits (68), Expect = 3.6
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Frame = +3
Query: 18 ITDAWNLTQNRLRCCGVEDGQWDIYINSYWDNITNIDLNNMNLKISRHNPFYQFVPISCC 197
+T+AW++ Q RCCGV + + W + N VP SCC
Sbjct: 134 LTNAWSIIQTDFRCCGVSN-------YTDWFEVYNATR----------------VPDSCC 170
Query: 198 WLLVD------PQTGWPGTVYRNVK 254
D P T W Y VK
Sbjct: 171 LEFSDSCGLHEPGTWWKSPCYETVK 195
>sp|Q8BJU2|TSN9_MOUSE Tetraspanin-9 (Tspan-9) (Tetraspan NET-5)
Length = 239
Score = 30.4 bits (67), Expect = 4.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 18 ITDAWNLTQNRLRCCGVED 74
+ +AWN+ Q +RCCGV D
Sbjct: 134 LKNAWNIIQAEMRCCGVTD 152
>sp|O75954|TSN9_HUMAN Tetraspanin-9 (Tspan-9) (Tetraspan NET-5)
Length = 239
Score = 30.4 bits (67), Expect = 4.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 18 ITDAWNLTQNRLRCCGVED 74
+ +AWN+ Q +RCCGV D
Sbjct: 134 LKNAWNIIQAEMRCCGVTD 152
>sp|O95859|TSN12_HUMAN Tetraspanin-12 (Tspan-12) (Transmembrane 4 superfamily member 12)
(Tetraspan NET-2)
Length = 305
Score = 30.4 bits (67), Expect = 4.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 6 RTRLITDAWNLTQNRLRCCGVEDGQWDIYINSYWDNITNID 128
R R +T AWN Q +CCGV +Y W +T +D
Sbjct: 142 RYRWLTHAWNFFQREFKCCGV------VYFTD-WLEMTEMD 175
>sp|Q05034|OPA67_NEIGO Opacity protein opA67 precursor
Length = 233
Score = 30.0 bits (66), Expect = 6.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 451 YKGKTRRKEKRLLHAASSFGKSQDYPLEEREQFNP 555
Y KT +E HAASS G S Y + ++F P
Sbjct: 94 YNKKTENQENGTFHAASSLGLSAVYDFKLNDKFKP 128
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,150,024
Number of Sequences: 369166
Number of extensions: 1513708
Number of successful extensions: 3699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3699
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)