Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_L11
(718 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 408 e-114
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 407 e-113
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 407 e-113
sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin) 407 e-113
sp|P02554|TBB_PIG Tubulin beta chain 407 e-113
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 407 e-113
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 406 e-113
sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin cla... 406 e-113
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 405 e-113
sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15) 405 e-113
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 408 bits (1048), Expect = e-114
Identities = 199/201 (99%), Positives = 201/201 (100%)
Frame = +1
Query: 1 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 180
HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV
Sbjct: 227 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 286
Query: 181 PELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 360
PELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP
Sbjct: 287 PELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346
Query: 361 NNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEM 540
NNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEM
Sbjct: 347 NNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKAFLHWYTGEGMDEM 406
Query: 541 EFTEAESNMNDLVSEYQQYQD 603
EFTEAESNMNDLVSEYQQYQD
Sbjct: 407 EFTEAESNMNDLVSEYQQYQD 427
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 407 bits (1047), Expect = e-113
Identities = 198/201 (98%), Positives = 201/201 (100%)
Frame = +1
Query: 1 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 180
HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV
Sbjct: 227 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 286
Query: 181 PELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 360
PELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP
Sbjct: 287 PELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346
Query: 361 NNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEM 540
NNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEM
Sbjct: 347 NNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEM 406
Query: 541 EFTEAESNMNDLVSEYQQYQD 603
EFTEAESNMNDLVSEYQQYQD
Sbjct: 407 EFTEAESNMNDLVSEYQQYQD 427
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 407 bits (1047), Expect = e-113
Identities = 198/201 (98%), Positives = 201/201 (100%)
Frame = +1
Query: 1 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 180
HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV
Sbjct: 227 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 286
Query: 181 PELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 360
PELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP
Sbjct: 287 PELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346
Query: 361 NNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEM 540
NNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEM
Sbjct: 347 NNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEM 406
Query: 541 EFTEAESNMNDLVSEYQQYQD 603
EFTEAESNMNDLVSEYQQYQD
Sbjct: 407 EFTEAESNMNDLVSEYQQYQD 427
>sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin)
Length = 292
Score = 407 bits (1047), Expect = e-113
Identities = 198/201 (98%), Positives = 201/201 (100%)
Frame = +1
Query: 1 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 180
HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV
Sbjct: 72 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 131
Query: 181 PELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 360
PELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP
Sbjct: 132 PELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 191
Query: 361 NNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEM 540
NNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEM
Sbjct: 192 NNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEM 251
Query: 541 EFTEAESNMNDLVSEYQQYQD 603
EFTEAESNMNDLVSEYQQYQD
Sbjct: 252 EFTEAESNMNDLVSEYQQYQD 272
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 407 bits (1046), Expect = e-113
Identities = 197/201 (98%), Positives = 201/201 (100%)
Frame = +1
Query: 1 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 180
HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV
Sbjct: 227 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 286
Query: 181 PELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 360
PELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP
Sbjct: 287 PELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346
Query: 361 NNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEM 540
NNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEM
Sbjct: 347 NNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEM 406
Query: 541 EFTEAESNMNDLVSEYQQYQD 603
EFTEAESNMNDLVSEYQQYQD
Sbjct: 407 EFTEAESNMNDLVSEYQQYQD 427
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 407 bits (1046), Expect = e-113
Identities = 197/201 (98%), Positives = 201/201 (100%)
Frame = +1
Query: 1 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 180
HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV
Sbjct: 227 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 286
Query: 181 PELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 360
PELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP
Sbjct: 287 PELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346
Query: 361 NNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEM 540
NNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEM
Sbjct: 347 NNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEM 406
Query: 541 EFTEAESNMNDLVSEYQQYQD 603
EFTEAESNMNDLVSEYQQYQD
Sbjct: 407 EFTEAESNMNDLVSEYQQYQD 427
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 406 bits (1044), Expect = e-113
Identities = 197/201 (98%), Positives = 201/201 (100%)
Frame = +1
Query: 1 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 180
HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV
Sbjct: 227 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 286
Query: 181 PELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 360
PELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP
Sbjct: 287 PELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346
Query: 361 NNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEM 540
NNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEM
Sbjct: 347 NNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEM 406
Query: 541 EFTEAESNMNDLVSEYQQYQD 603
EFTEAESNMNDLVSEYQQYQD
Sbjct: 407 EFTEAESNMNDLVSEYQQYQD 427
>sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin class-I)
Length = 445
Score = 406 bits (1044), Expect = e-113
Identities = 197/201 (98%), Positives = 201/201 (100%)
Frame = +1
Query: 1 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 180
HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV
Sbjct: 227 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 286
Query: 181 PELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 360
PELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP
Sbjct: 287 PELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346
Query: 361 NNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEM 540
NNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEM
Sbjct: 347 NNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEM 406
Query: 541 EFTEAESNMNDLVSEYQQYQD 603
EFTEAESNMNDLVSEYQQYQD
Sbjct: 407 EFTEAESNMNDLVSEYQQYQD 427
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 405 bits (1042), Expect = e-113
Identities = 196/201 (97%), Positives = 200/201 (99%)
Frame = +1
Query: 1 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 180
HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV
Sbjct: 227 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 286
Query: 181 PELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 360
PELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP
Sbjct: 287 PELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346
Query: 361 NNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEM 540
NNVKTAVCDIPPRGLKM+ TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEM
Sbjct: 347 NNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEM 406
Query: 541 EFTEAESNMNDLVSEYQQYQD 603
EFTEAESNMNDLVSEYQQYQD
Sbjct: 407 EFTEAESNMNDLVSEYQQYQD 427
>sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15)
Length = 445
Score = 405 bits (1040), Expect = e-113
Identities = 196/201 (97%), Positives = 201/201 (100%)
Frame = +1
Query: 1 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 180
HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV
Sbjct: 227 HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 286
Query: 181 PELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 360
PELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP
Sbjct: 287 PELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346
Query: 361 NNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEM 540
NNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDEM
Sbjct: 347 NNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEM 406
Query: 541 EFTEAESNMNDLVSEYQQYQD 603
EFTEAESNMN+LVSEYQQYQD
Sbjct: 407 EFTEAESNMNELVSEYQQYQD 427
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,179,822
Number of Sequences: 369166
Number of extensions: 1306842
Number of successful extensions: 3960
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3801
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)