Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_K21
(520 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8XNE2|NADB_CLOPE L-aspartate oxidase (LASPO) (Quinolina... 35 0.14
sp|P07602|SAP_HUMAN Proactivator polypeptide precursor [Con... 33 0.53
sp|O75145|LIPA3_HUMAN Liprin-alpha 3 (Protein tyrosine phos... 31 2.0
sp|P40164|YNU1_YEAST Hypothetical 98.1 kDa protein in SPX19... 30 2.6
sp|P60469|LIPA3_MOUSE Liprin-alpha 3 (Protein tyrosine phos... 30 2.6
sp|Q91Z79|LIPA3_RAT Liprin-alpha 3 (Protein tyrosine phosph... 30 2.6
sp|Q97GY2|TRMU_CLOAB Probable tRNA (5-methylaminomethyl-2-t... 30 3.4
sp|Q8DJY0|METE_SYNEL 5-methyltetrahydropteroyltriglutamate-... 30 3.4
sp|Q96M20|CT152_HUMAN Protein C20orf152 30 4.5
sp|Q6YXN6|MATK_PHYPA Maturase K (Intron maturase) 30 4.5
>sp|Q8XNE2|NADB_CLOPE L-aspartate oxidase (LASPO) (Quinolinate synthetase B)
Length = 439
Score = 34.7 bits (78), Expect = 0.14
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 219 IDRDLFEEMVVDQFEKVYCNKLFPKKEHMCKKFLKNELPNILNK 350
+ RD+ + + ++ +K N +F M K FL+N PNI NK
Sbjct: 265 LPRDIVSKKIYEEMKKTNSNNVFLDVSFMEKSFLQNRFPNIYNK 308
>sp|P07602|SAP_HUMAN Proactivator polypeptide precursor [Contains: Saposin A (Protein
A); Saposin B-Val; Saposin B (Sphingolipid activator
protein 1) (SAP-1) (Cerebroside sulfate activator)
(CSAct) (Dispersin) (Sulfatide/GM1 activator); Saposin C
(Co-beta-glucosidase) (A1 activator) (Glucosylceramidase
activator) (Sphingolipid activator protein 2) (SAP-2);
Saposin D (Protein C) (Component C)]
Length = 524
Score = 32.7 bits (73), Expect = 0.53
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = +3
Query: 177 CEVCKAFSDVFSSGIDRDLFEEMVVDQFEKVYCNKLFPKKEHMCKKFLKNELPNILNKLR 356
CEVC+ + ID + E+ ++D F+K+ C+KL C++ + +IL+ L
Sbjct: 315 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKM-CSKLPKSLSEECQEVVDTYGSSILSILL 373
Query: 357 VSIHRDYLCN--STCNGKLSKDWIVSFTEHFFTNEDKKCPACK 479
+ + +C+ C+G V T+ + C CK
Sbjct: 374 EEVSPELVCSMLHLCSGTRLPALTVHVTQ---PKDGGFCEVCK 413
>sp|O75145|LIPA3_HUMAN Liprin-alpha 3 (Protein tyrosine phosphatase receptor type f
polypeptide-interacting protein alpha 3)
(PTPRF-interacting protein alpha 3)
Length = 1194
Score = 30.8 bits (68), Expect = 2.0
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +3
Query: 111 TTNEMHSFYYDTFDFTRQTSKRCEVCKAFSDVFSSGIDRDLFEEMVVDQFEKVYCNKLFP 290
T EM S T T++ S E A+ D+ + D + + Q+ + L
Sbjct: 923 THEEMESLTATTKPETKEIS--WEQILAYGDMNHEWVGNDWLPSLGLPQYRSYFMESLVD 980
Query: 291 KK--EHMCKKFLKNELPNILNKLRVSIHRDYLCNSTCN 398
+ +H+ KK L+ +L + + RVS+H +C N
Sbjct: 981 ARMLDHLNKKELRGQLKMVDSFHRVSLHYGIMCLKRLN 1018
>sp|P40164|YNU1_YEAST Hypothetical 98.1 kDa protein in SPX19-GCR2 intergenic region
Length = 858
Score = 30.4 bits (67), Expect = 2.6
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 372 DYLCNSTCNGKLSKDWIVSFTEHFFTNEDKKCPACKY-VSNILKSLI 509
D+L N T L ++I + HF E++K P + +SNI+K+LI
Sbjct: 181 DFLKNETIEFILQSNYIDTLISHFHKAEEEKIPKDLFLLSNIIKTLI 227
>sp|P60469|LIPA3_MOUSE Liprin-alpha 3 (Protein tyrosine phosphatase receptor type f
polypeptide-interacting protein alpha 3)
(PTPRF-interacting protein alpha 3)
Length = 1043
Score = 30.4 bits (67), Expect = 2.6
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +3
Query: 111 TTNEMHSFYYDTFDFTRQTSKRCEVCKAFSDVFSSGIDRDLFEEMVVDQFEKVYCNKLFP 290
T EM S T T++ S E A+ D+ + D + + Q+ + L
Sbjct: 772 THEEMESLTAATKPETKEIS--WEQILAYGDMNHEWVGNDWLPSLGLPQYRSYFMESLVD 829
Query: 291 KK--EHMCKKFLKNELPNILNKLRVSIHRDYLCNSTCN 398
+ +H+ KK L+ +L + + RVS+H +C N
Sbjct: 830 ARMLDHLNKKELRGQLKMVDSFHRVSLHYGIMCLKRLN 867
>sp|Q91Z79|LIPA3_RAT Liprin-alpha 3 (Protein tyrosine phosphatase receptor type f
polypeptide-interacting protein alpha 3)
(PTPRF-interacting protein alpha 3)
Length = 1192
Score = 30.4 bits (67), Expect = 2.6
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +3
Query: 111 TTNEMHSFYYDTFDFTRQTSKRCEVCKAFSDVFSSGIDRDLFEEMVVDQFEKVYCNKLFP 290
T EM S T T++ S E A+ D+ + D + + Q+ + L
Sbjct: 921 THEEMESLTAATKPETKEIS--WEQILAYGDMNHEWVGNDWLPSLGLPQYRSYFMESLVD 978
Query: 291 KK--EHMCKKFLKNELPNILNKLRVSIHRDYLCNSTCN 398
+ +H+ KK L+ +L + + RVS+H +C N
Sbjct: 979 ARMLDHLNKKELREQLKMVDSFHRVSLHYGIMCLKRLN 1016
>sp|Q97GY2|TRMU_CLOAB Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
Length = 355
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 228 DLFEEMVVDQFEKVYCNKLFPKKEHMCKKFLKNELPNILNKLRVSIHRDYL 380
D+F+E V+D F + Y N P C K++K + L K S+ DY+
Sbjct: 77 DIFKEKVIDYFTEEYLNGKTPNPCIACNKYIKFD---ALLKKAESLGADYI 124
>sp|Q8DJY0|METE_SYNEL 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (Methionine synthase, vitamin-B12
independent isozyme) (Cobalamin-independent methionine
synthase)
Length = 758
Score = 30.0 bits (66), Expect = 3.4
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 30 VILHELENVLSVKNVCYKIYRCPMNLETTNEMHSFYYDTFDFTRQTSKRCEVCKAFSDV 206
++L EL+N+ V+ +I+ + LE + SFY TFD RQ + + F D+
Sbjct: 183 ILLRELKNLGVVE---VQIHEPALVLEEADSFKSFYQSTFDTLRQANLPLHLVTYFDDL 238
>sp|Q96M20|CT152_HUMAN Protein C20orf152
Length = 576
Score = 29.6 bits (65), Expect = 4.5
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 180 EVCKAFSDVFSSGIDRDLFEEMVVDQFEKVYCNKLFPKKEHMCKKFLKNELPNILNK 350
E+ + ++F ID D +EM+ + N FP E MC+KFL+ NI K
Sbjct: 448 ELIRIRKEIFYELIDND--DEMIKKLLK---LNIAFPSDEDMCQKFLQQNSWNIFRK 499
>sp|Q6YXN6|MATK_PHYPA Maturase K (Intron maturase)
Length = 505
Score = 29.6 bits (65), Expect = 4.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 359 NSKFV*DVW*FVFQEFFTHMFFLGEKFVTINLFKLIDNHF 240
NS F+ + W F F +F+ + F+ K INL K+ N F
Sbjct: 281 NSNFLAEKWKFFFYKFWQYYFYYLFKLSRINLKKISKNCF 320
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,825,125
Number of Sequences: 369166
Number of extensions: 1180921
Number of successful extensions: 3609
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3609
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)